Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2
作者： David B Jaffe , Jonathan Butler , Sante Gnerre , Evan Mauceli , Kerstin Lindblad-Toh
DOI: 10.1101/GR.828403
关键词:
摘要: We previously described the whole-genome assembly program Arachne, presenting assemblies of simulated data for small to mid-sized genomes. Here we describe algorithmic adaptations program, allowing mammalian-size genomes, and also improving smaller Three principal changes were simultaneously made applied mouse genome, during a six-month period development: (1) Supercontigs (scaffolds) iteratively broken rejoined using several criteria, yielding 64-fold increase in length (N50), apparent elimination all global misjoins; (2) gaps between contigs supercontigs filled (partially or completely) by insertion reads, as suggested pairing within supercontig, increasing N50 contig 50%; (3) memory usage was reduced fourfold. The outcome this its analysis are (Mouse Genome Sequencing Consortium 2002).
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