Panel-based testing for inherited colorectal cancer: a descriptive study of clinical testing performed by a US laboratory.

作者: D. Cragun , C. Radford , J.S. Dolinsky , M. Caldwell , E. Chao

DOI: 10.1111/CGE.12359

关键词:

摘要: Next-generation sequencing enables testing for multiple genes simultaneously (‘panel-based testing’) as opposed to sequential one inherited condition at a time (‘syndrome-based testing’). This study presents results from patients who underwent hereditary colorectal cancer (CRC) panel-based (‘ColoNext™’). De-identified data clinical laboratory were used calculate (1) frequencies patient demographic, clinical, and family history variables (2) rates of pathogenic mutations variants uncertain significance (VUS). The proportion individuals with mutation met national syndrome-based criteria was also determined. Of 586 patients, identified in 10.4%, while 20.1% had least VUS. After removing eight CHEK2 11 MUTYH heterozygotes, the percentage ‘actionable’ that would clearly alter screening recommendations per guidelines decreased 7.2%. 42 an result, 30 (71%) established guidelines. descriptive is among first report on large series undergoing CRC. Results are discussed context benefits concerns have been raised about implementation. Conflict interest Cristi Radford Jill Dolinsky full-time employees commercial Ambry Genetics, which performs ColoNext™ testing. Elizabeth Chao paid consultant Ambry. Deborah Cragun, Meghan Caldwell, Tuya Pal no potential conflicts interest. Specifically, they not employed by Ambry, did receive any financial or other incentives

参考文章(26)
John R. ten Bosch, Wayne W. Grody, Keeping Up With the Next Generation: Massively Parallel Sequencing in Clinical Diagnostics The Journal of Molecular Diagnostics. ,vol. 10, pp. 484- 492 ,(2008) , 10.2353/JMOLDX.2008.080027
Tuya Pal, Deborah Cragun, Courtney Lewis, Andrea Doty, Maria Rodriguez, Cristi Radford, Zachary Thompson, Jongphil Kim, Susan T. Vadaparampil, A statewide survey of practitioners to assess knowledge and clinical practices regarding hereditary breast and ovarian cancer. Genetic Testing and Molecular Biomarkers. ,vol. 17, pp. 367- 375 ,(2013) , 10.1089/GTMB.2012.0381
C. Cybulski, B. Górski, T. Huzarski, B. Masojć, M. Mierzejewski, T. Dębniak, U. Teodorczyk, T. Byrski, J. Gronwald, J. Matyjasik, E. Złowocka, M. Lenner, E. Grabowska, K. Nej, J. Castaneda, K. Mędrek, A. Szymańska, J. Szymańska, G. Kurzawski, J. Suchy, O. Oszurek, A. Witek, S.A. Narod, J. Lubiński, CHEK2 is a multiorgan cancer susceptibility gene American Journal of Human Genetics. ,vol. 75, pp. 1131- 1135 ,(2004) , 10.1086/426403
Susan M. Farrington, Albert Tenesa, Rebecca Barnetson, Alice Wiltshire, James Prendergast, Mary Porteous, Harry Campbell, Malcolm G. Dunlop, Reply to Webb et al. American Journal of Human Genetics. ,vol. 79, pp. 771- 772 ,(2006) , 10.1086/507913
C Sue Richards, Sherri Bale, Daniel B Bellissimo, Soma Das, Wayne W Grody, Madhuri R Hegde, Elaine Lyon, Brian E Ward, None, ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007 Genetics in Medicine. ,vol. 10, pp. 294- 300 ,(2008) , 10.1097/GIM.0B013E31816B5CAE
Emily L. Webb, Mathew F. Rudd, Richard S. Houlston, Colorectal Cancer Risk in Monoallelic Carriers of MYH Variants American Journal of Human Genetics. ,vol. 79, pp. 768- 771 ,(2006) , 10.1086/507912
M H Nieuwenhuis, S Vogt, N Jones, M Nielsen, F J Hes, J R Sampson, S Aretz, H F A Vasen, Evidence for accelerated colorectal adenoma–carcinoma progression in MUTYH-associated polyposis? Gut. ,vol. 61, pp. 734- 738 ,(2012) , 10.1136/GUT.2010.229104
Randall W. Burt, Colon cancer screening Gastroenterology. ,vol. 119, pp. 837- 853 ,(2000) , 10.1053/GAST.2000.16508
Colin C. Pritchard, Christina Smith, Stephen J. Salipante, Ming K. Lee, Anne M. Thornton, Alex S. Nord, Cassandra Gulden, Sonia S. Kupfer, Elizabeth M. Swisher, Robin L. Bennett, Akiva P. Novetsky, Gail P. Jarvik, Olufunmilayo I. Olopade, Paul J. Goodfellow, Mary-Claire King, Jonathan F. Tait, Tom Walsh, ColoSeq Provides Comprehensive Lynch and Polyposis Syndrome Mutational Analysis Using Massively Parallel Sequencing The Journal of Molecular Diagnostics. ,vol. 14, pp. 357- 366 ,(2012) , 10.1016/J.JMOLDX.2012.03.002