Computational design tools for synthetic biology.

作者: Mario A Marchisio , Jörg Stelling

DOI: 10.1016/J.COPBIO.2009.08.007

关键词:

摘要: … rational (and graphical) composition of genetic circuits from standard parts, and subsequent simulation for testing the predicted functions in silico. The computational design of DNA and …

参考文章(48)
J. Kaiser, GENE THERAPY: Putting the Fingers On Gene Repair Science. ,vol. 310, pp. 1894- 1896 ,(2005) , 10.1126/SCIENCE.310.5756.1894
I. L. Hofacker, W. Fontana, P. F. Stadler, L. S. Bonhoeffer, M. Tacker, P. Schuster, Fast folding and comparison of RNA secondary structures Monatshefte Fur Chemie. ,vol. 125, pp. 167- 188 ,(1994) , 10.1007/BF00818163
Michael B. Elowitz, Stanislas Leibler, A synthetic oscillatory network of transcriptional regulators Nature. ,vol. 403, pp. 335- 338 ,(2000) , 10.1038/35002125
Lars Kuepfer, Uwe Sauer, Pablo A Parrilo, Efficient classification of complete parameter regions based on semidefinite programming BMC Bioinformatics. ,vol. 8, pp. 12- 12 ,(2007) , 10.1186/1471-2105-8-12
Alan Villalobos, Jon E Ness, Claes Gustafsson, Jeremy Minshull, Sridhar Govindarajan, Gene Designer: a synthetic biology tool for constructing artificial DNA segments BMC Bioinformatics. ,vol. 7, pp. 285- 285 ,(2006) , 10.1186/1471-2105-7-285
M.J. Mohideen, J.D. Perkins, E.N. Pistikopoulos, Towards an efficient numerical procedure for mixed integer optimal control Computers & Chemical Engineering. ,vol. 21, ,(1997) , 10.1016/S0098-1354(97)87544-8
Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano, From in vivo to in silico biology and back. Nature. ,vol. 443, pp. 527- 533 ,(2006) , 10.1038/NATURE05127
Kim T. Simons, Rich Bonneau, Ingo Ruczinski, David Baker, Ab initio protein structure prediction of CASP III targets using ROSETTA Proteins: Structure, Function, and Genetics. ,vol. 37, pp. 171- 176 ,(1999) , 10.1002/(SICI)1097-0134(1999)37:3+<171::AID-PROT21>3.0.CO;2-Z
P. Francois, V. Hakim, Design of genetic networks with specified functions by evolution in silico Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 580- 585 ,(2004) , 10.1073/PNAS.0304532101
Vikrant Bansal, Vassilis Sakizlis, Roderick Ross, John D. Perkins, Efstratios N. Pistikopoulos, New algorithms for mixed-integer dynamic optimization Computers & Chemical Engineering. ,vol. 27, pp. 647- 668 ,(2003) , 10.1016/S0098-1354(02)00261-2