Mechanisms of Interplay between Transcription Factors and the 3D Genome

作者: Seungsoo Kim , Jay Shendure

DOI: 10.1016/J.MOLCEL.2019.08.010

关键词:

摘要: Transcription factors (TFs) bind DNA in a sequence-specific manner and thereby serve as the protein anchors and determinants of 3D genome organization. Conversely, chromatin …

参考文章(149)
Borbala Mifsud, Filipe Tavares-Cadete, Alice N Young, Robert Sugar, Stefan Schoenfelder, Lauren Ferreira, Steven W Wingett, Simon Andrews, William Grey, Philip A Ewels, Bram Herman, Scott Happe, Andy Higgs, Emily LeProust, George A Follows, Peter Fraser, Nicholas M Luscombe, Cameron S Osborne, Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C Nature Genetics. ,vol. 47, pp. 598- 606 ,(2015) , 10.1038/NG.3286
Adrian L Sanborn, Suhas SP Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li, Kristopher P Geeting, Andreas Gnirke, Alexandre Melnikov, Doug McKenna, Elena K Stamenova, Eric S Lander, Erez Lieberman Aiden, None, Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 112, pp. 201518552- ,(2015) , 10.1073/PNAS.1518552112
Darío G. Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M. Opitz, Renata Laxova, Fernando Santos-Simarro, Brigitte Gilbert-Dussardier, Lars Wittler, Marina Borschiwer, Stefan A. Haas, Marco Osterwalder, Martin Franke, Bernd Timmermann, Jochen Hecht, Malte Spielmann, Axel Visel, Stefan Mundlos, Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions Cell. ,vol. 161, pp. 1012- 1025 ,(2015) , 10.1016/J.CELL.2015.04.004
Bing Ren, Adrian R. Krainer, Tom Maniatis, Qiang Wu, Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U. Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang, Yichao Lu, Yonghu Wu, Zhilian Jia, Wei Li, Michael Q. Zhang, CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function Cell. ,vol. 162, pp. 900- 910 ,(2015) , 10.1016/J.CELL.2015.07.038
Paul E. Love, Claude Warzecha, LiQi Li, Ldb1 complexes: the new master regulators of erythroid gene transcription Trends in Genetics. ,vol. 30, pp. 1- 9 ,(2014) , 10.1016/J.TIG.2013.10.001
Wulan Deng, Jongjoo Lee, Hongxin Wang, Jeff Miller, Andreas Reik, Philip D. Gregory, Ann Dean, Gerd A. Blobel, Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell. ,vol. 149, pp. 1233- 1244 ,(2012) , 10.1016/J.CELL.2012.03.051
Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021
Brenda Han, Melissa J Fullwood, Mei Hui Liu, You Fu Pan, Jun-Jun Liu, Xu Han, Yusoff Bin Mohamed, Yuriy L Orlov, Stoyan Velkov, Andrea Ho, Poh Huay Mei, Elaine GY Chew, Phillips Yao Hui Huang, Willem-Jan Welboren, Yuyuan Han, Hong Sain Ooi, Pramila N Ariyaratne, Vinsensius B Vega, Yanquan Luo, Peck Yean Tan, Pei Ye Choy, KD Wansa, Bing Zhao, Kar Sian Lim, Shi Chi Leow, Jit Sin Yow, Roy Joseph, Haixia Li, Kartiki V Desai, Jane S Thomsen, Yew Kok Lee, R Karuturi, Thoreau Herve, Guillaume Bourque, Hendrik G Stunnenberg, Xiaoan Ruan, Valere Cacheux-Rataboul, Wing-Kin Sung, Edison T Liu, Chia-Lin Wei, Edwin Cheung, Yijun Ruan, An oestrogen-receptor-α-bound human chromatin interactome Nature. ,vol. 462, pp. 58- 64 ,(2009) , 10.1038/NATURE08497
Benjamin L. Allen, Dylan J. Taatjes, The Mediator complex: a central integrator of transcription Nature Reviews Molecular Cell Biology. ,vol. 16, pp. 155- 166 ,(2015) , 10.1038/NRM3951
Marieke Simonis, Petra Klous, Erik Splinter, Yuri Moshkin, Rob Willemsen, Elzo de Wit, Bas van Steensel, Wouter de Laat, Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genetics. ,vol. 38, pp. 1348- 1354 ,(2006) , 10.1038/NG1896