Pedigree‐based assignment tests for reversing coyote (Canis latrans) introgression into the wild red wolf (Canis rufus) population

作者: Craig R. Miller , Jennifer R. Adams , Lisette P. Waits

DOI: 10.1046/J.1365-294X.2003.02003.X

关键词:

摘要: The principal threat to the persistence of endangered red wolf (Canis rufus) in wild is hybridization with coyote latrans). To facilitate idengification and removal hybrids, assignment tests are developed which use genotype data estimate identity as coyote, 1/4, 1/2, 3/4 or full wolf. genotypes from wolves that founded surviving population resulting pedigree, rather than a contemporary sample. evaluated by analysing both captive at 18 microsatellite loci, simulated under highly parameterized, biologically reasonable model. accuracy rates generally high, over 95% known idengified correctly. There are, however, tradeoffs between ambiguous assignments misassignments, misidengifying hybrids wolves. These result compromise limiting introgression avoiding demographic losses. management priorities level determine combination test strategy best balances these tradeoffs. Ultimately, we conclude has capacity arrest reverse introgression. our knowledge, presented approach novel it accounts for genetic drift when analysis temporally separated reference populations they being assigned. methods may be valuable cases where databases small have aged substantially, pedigree information available generated historical samples.

参考文章(35)
J. L. Longmire, R. E. Ambrose, N. C. Brown, T. J. Cade, T. L. Maechtle, W. S. Seegar, F. P. Ward, C. M. White, Use of sex-linked minisatellite fragments to investigate genetic differentiation and migration of North American populations of the peregrine falcon (Falco peregrinus). Experientia. Supplementum. ,vol. 58, pp. 217- 229 ,(1991) , 10.1007/978-3-0348-7312-3_15
Bruce Rannala, Gregory A. Wilson, Bayesian Inference of Recent Migration Rates Using Multilocus Genotypes Genetics. ,vol. 163, pp. 1177- 1191 ,(2003) , 10.1093/GENETICS/163.3.1177
Jean-Marie Cornuet, Sylvain Piry, Gordon Luikart, Arnaud Estoup, Michel Solignac, None, New Methods Employing Multilocus Genotypes to Select or Exclude Populations as Origins of Individuals Genetics. ,vol. 153, pp. 1989- 2000 ,(1999) , 10.1093/GENETICS/153.4.1989
E. VÁzquez-Domínguez, D. Paetkau, N. Tucker, G. Hinten, C. Moritz, Resolution of natural groups using iterative assignment tests: an example from two species of Australian native rats (Rattus). Molecular Ecology. ,vol. 10, pp. 2069- 2078 ,(2001) , 10.1046/J.1365-294X.2001.01327.X
S C Blott, J L Williams, C S Haley, DISCRIMINATING AMONG CATTLE BREEDS USING GENETIC MARKERS Heredity. ,vol. 82, pp. 613- 619 ,(1999) , 10.1046/J.1365-2540.1999.00521.X
Michael M. Hansen, Ellen Kenchington, Einar E. Nielsen, Assigning individual fish to populations using microsatellite DNA markers Fish and Fisheries. ,vol. 2, pp. 93- 112 ,(2001) , 10.1046/J.1467-2960.2001.00043.X
Michael S. Roy, Eli Geffen, Deborah Smith, Robert K. Wayne, Molecular Genetics of Pre-1940 Red Wolves Conservation Biology. ,vol. 10, pp. 1413- 1424 ,(1996) , 10.1046/J.1523-1739.1996.10051413.X
Matthias Höss, Svante Pääbo, DNA extraction from Pleistocene bones by a silica-based purification method Nucleic Acids Research. ,vol. 21, pp. 3913- 3914 ,(1993) , 10.1093/NAR/21.16.3913
Primmer Craig R., Mikko T. Koskinen, Jorma Piironen, The one that did not get away: individual assignment using microsatellite data detects a case of fishing competition fraud Proceedings of The Royal Society B: Biological Sciences. ,vol. 267, pp. 1699- 1704 ,(2000) , 10.1098/RSPB.2000.1197