Semantic segmentation of cerebrospinal fluid and brain volume with a convolutional neural network in pediatric hydrocephalus—transfer learning from existing algorithms

作者: Florian Grimm , Florian Edl , Susanne R. Kerscher , Kay Nieselt , Isabel Gugel

DOI: 10.1007/S00701-020-04447-X

关键词:

摘要: Background For the segmentation of medical imaging data, a multitude of precise but very specific algorithms exist. In previous studies, we investigated the possibility of segmenting …

参考文章(40)
Vijay Badrinarayanan, Alex Kendall, Roberto Cipolla, SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation IEEE Transactions on Pattern Analysis and Machine Intelligence. ,vol. 39, pp. 2481- 2495 ,(2017) , 10.1109/TPAMI.2016.2644615
Mark Jenkinson, Christian F. Beckmann, Timothy E.J. Behrens, Mark W. Woolrich, Stephen M. Smith, New advances in the Clinica software platform for clinical neuroimaging studies NeuroImage. ,(2019) , 10.1016/J.NEUROIMAGE.2011.09.015
Florian Grimm, Florian Edl, Isabel Gugel, Susanne R. Kerscher, Benjamin Bender, Martin U. Schuhmann, Automatic volumetry of cerebrospinal fluid and brain volume in severe paediatric hydrocephalus, implementation and clinical course after intervention. Acta Neurochirurgica. ,vol. 162, pp. 23- 30 ,(2020) , 10.1007/S00701-019-04143-5
Florian Grimm, Florian Edl, Isabel Gugel, Susanne R. Kerscher, Martin U. Schuhmann, Planar single plane area determination is a viable substitute for total volumetry of CSF and brain in childhood hydrocephalus. Acta Neurochirurgica. ,vol. 162, pp. 993- 1000 ,(2020) , 10.1007/S00701-019-04160-4
Pim Moeskops, Manon J.N.L. Benders, Sabina M. Chiţǎ, Karina J. Kersbergen, Floris Groenendaal, Linda S. de Vries, Max A. Viergever, Ivana Išgum, Automatic segmentation of MR brain images of preterm infants using supervised classification NeuroImage. ,vol. 118, pp. 628- 641 ,(2015) , 10.1016/J.NEUROIMAGE.2015.06.007
Benjamin Warf, Solomon Ondoma, Abhaya Kulkarni, Ruth Donnelly, Miriam Ampeire, Joan Akona, Collin R. Kabachelor, Ronald Mulondo, Brian Kaaya Nsubuga, Neurocognitive outcome and ventricular volume in children with myelomeningocele treated for hydrocephalus in Uganda Journal of Neurosurgery. ,vol. 4, pp. 564- 570 ,(2009) , 10.3171/2009.7.PEDS09136
Karen Simonyan, Andrew Zisserman, Very Deep Convolutional Networks for Large-Scale Image Recognition computer vision and pattern recognition. ,(2014)
Adriënne M Mendrik, Koen L Vincken, Hugo J Kuijf, Marcel Breeuwer, Willem H Bouvy, Jeroen De Bresser, Amir Alansary, Marleen De Bruijne, Aaron Carass, Ayman El-Baz, Amod Jog, Ranveer Katyal, Ali R Khan, Fedde Van Der Lijn, Qaiser Mahmood, Ryan Mukherjee, Annegreet Van Opbroek, Sahil Paneri, Sérgio Pereira, Mikael Persson, Martin Rajchl, Duygu Sarikaya, Örjan Smedby, Carlos A Silva, Henri A Vrooman, Saurabh Vyas, Chunliang Wang, Liang Zhao, Geert Jan Biessels, Max A Viergever, None, MRBrainS challenge: online evaluation framework for brain image segmentation in 3T MRI scans Computational Intelligence and Neuroscience. ,vol. 2015, pp. 813696- 813696 ,(2015) , 10.1155/2015/813696
Cybèle Ciofolo, Christian Barillot, Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control. Medical Image Analysis. ,vol. 13, pp. 456- 470 ,(2009) , 10.1016/J.MEDIA.2009.02.008
Dana W. Moore, Ilhami Kovanlikaya, Linda A. Heier, Ashish Raj, Chaorui Huang, King-Wai Chu, Norman R. Relkin, A Pilot Study of Quantitative MRI Measurements of Ventricular Volume and Cortical Atrophy for the Differential Diagnosis of Normal Pressure Hydrocephalus Neurology Research International. ,vol. 2012, pp. 718150- 718150 ,(2012) , 10.1155/2012/718150