Filamentous fungi from extreme environments as a promising source of novel bioactive secondary metabolites.

作者: Renato Chávez , Francisco Fierro , Ramón O. García-Rico , Inmaculada Vaca

DOI: 10.3389/FMICB.2015.00903

关键词:

摘要: Natural product search is undergoing resurgence upon the discovery of a huge previously unknown potential for secondary metabolite (SM) production hidden in microbial genomes. This also case filamentous fungi, since their genomes contain high number “orphan” SM gene clusters. Recent estimates indicate that only 5% existing fungal species have been described, thus novel metabolites fungi huge. In this context, thriving harsh environments are particular interest they outstanding producers unusual chemical structures. At present, there around 16 from extreme environment-isolated databases. preliminary analysis three these we found several predicted clusters probably involved biosynthesis compounds not yet described. Genome mining strategies allow exploitation information genome sequences new natural compounds. The synergy between and expected abundance promising path to discover as source medically useful drugs.

参考文章(61)
Axel A. Brakhage, Julia Schuemann, Sebastian Bergmann, Kirstin Scherlach, Volker Schroeckh, Christian Hertweck, Activation of fungal silent gene clusters: a new avenue to drug discovery. Progress in drug research. ,vol. 66, pp. 1- 12 ,(2008) , 10.1007/978-3-7643-8595-8_1
Natalie D. Fedorova, Venkatesh Moktali, Marnix H. Medema, Bioinformatics Approaches and Software for Detection of Secondary Metabolic Gene Clusters Fungal Secondary Metabolism. ,vol. 944, pp. 23- 45 ,(2012) , 10.1007/978-1-62703-122-6_2
Yazmid Reyes-Dominguez, Jin Woo Bok, Harald Berger, E. Keats Shwab, Asjad Basheer, Andreas Gallmetzer, Claudio Scazzocchio, Nancy Keller, Joseph Strauss, Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans Molecular Microbiology. ,vol. 76, pp. 1376- 1386 ,(2010) , 10.1111/J.1365-2958.2010.07051.X
Purification and Characterization John Wiley & Sons, Inc.. pp. 31- 54 ,(2006) , 10.1002/0470080124.CH3
Tilmann Weber, Kai Blin, Srikanth Duddela, Daniel Krug, Hyun Uk Kim, Robert Bruccoleri, Sang Yup Lee, Michael A. Fischbach, Rolf Müller, Wolfgang Wohlleben, Rainer Breitling, Eriko Takano, Marnix H. Medema, antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters Nucleic Acids Research. ,vol. 43, pp. 1- 7 ,(2015) , 10.1093/NAR/GKV437
Ranuka T. Hewage, Thammarat Aree, Chulabhorn Mahidol, Somsak Ruchirawat, Prasat Kittakoop, One strain-many compounds (OSMAC) method for production of polyketides, azaphilones, and an isochromanone using the endophytic fungus Dothideomycete sp. Phytochemistry. ,vol. 108, pp. 87- 94 ,(2014) , 10.1016/J.PHYTOCHEM.2014.09.013
Sebastian Bergmann, Julia Schümann, Kirstin Scherlach, Corinna Lange, Axel A Brakhage, Christian Hertweck, Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans Nature Chemical Biology. ,vol. 3, pp. 213- 217 ,(2007) , 10.1038/NCHEMBIO869
Jon C. Henrikson, Ashley R. Hoover, P. Matthew Joyner, Robert H. Cichewicz, A chemical epigenetics approach for engineering the in situ biosynthesis of a cryptic natural product from Aspergillus niger. Organic and Biomolecular Chemistry. ,vol. 7, pp. 435- 438 ,(2009) , 10.1039/B819208A
Tadeusz F Molinski, Microscale Methodology for Structure Elucidation of Natural Products Current Opinion in Biotechnology. ,vol. 21, pp. 819- 826 ,(2010) , 10.1016/J.COPBIO.2010.09.003
Jin Woo Bok, Rosa Ye, Kenneth D Clevenger, David Mead, Megan Wagner, Amanda Krerowicz, Jessica C Albright, Anthony W Goering, Paul M Thomas, Neil L Kelleher, Nancy P Keller, Chengcang C Wu, Fungal artificial chromosomes for mining of the fungal secondary metabolome BMC Genomics. ,vol. 16, pp. 343- 343 ,(2015) , 10.1186/S12864-015-1561-X