Computing quadratic entropy in evolutionary trees

作者: Drago Bokal , Matt DeVos , Sandi Klavžar , Aki Mimoto , Arne Ø. Mooers

DOI: 10.1016/J.CAMWA.2011.09.030

关键词:

摘要: We note here that quadratic entropy, a measure of biological diversity introduced by C.R. Rao, is variant the weighted Wiener index, graph invariant intensively studied in mathematical chemistry. This fact allows us to deduce some efficient algorithms for computing entropy case given tip weights, which may be useful community biodiversity measures. Furthermore, on ultrametric phylogenetic trees, maximum pairwise evolutionary distinctness conservation biology, S. Pavoine. present an algorithm maximizes this quantity linear time, offering significant improvement over currently used programming approaches.

参考文章(34)
Victor Chepoi, Sandi Klavžar, The Wiener Index and the Szeged Index of Benzenoid Systems in Linear Time Journal of Chemical Information and Computer Sciences. ,vol. 37, pp. 752- 755 ,(1997) , 10.1021/CI9700079
DAVID W. REDDING, ARNE Ø. MOOERS, Incorporating evolutionary measures into conservation prioritization. Conservation Biology. ,vol. 20, pp. 1670- 1678 ,(2006) , 10.1111/J.1523-1739.2006.00555.X
Bojan Mohar, Tomaž Pisanski, How to compute the Wiener index of a graph Journal of Mathematical Chemistry. ,vol. 2, pp. 267- 277 ,(1988) , 10.1007/BF01167206
C.Radhakrishna Rao, Diversity and dissimilarity coefficients: A unified approach Theoretical Population Biology. ,vol. 21, pp. 24- 43 ,(1982) , 10.1016/0040-5809(82)90004-1
A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S. Philosophical Transactions of the Royal Society B. ,vol. 213, pp. 21- 87 ,(1925) , 10.1098/RSTB.1925.0002
The Reconstructed Evolutionary Process Philosophical Transactions of the Royal Society B. ,vol. 344, pp. 305- 311 ,(1994) , 10.1098/RSTB.1994.0068
Daniel P. Faith, Conservation evaluation and phylogenetic diversity Biological Conservation. ,vol. 61, pp. 1- 10 ,(1992) , 10.1016/0006-3207(92)91201-3
Sandrine Pavoine, Sébastien Ollier, Anne-Béatrice Dufour, Is the originality of a species measurable Ecology Letters. ,vol. 8, pp. 579- 586 ,(2005) , 10.1111/J.1461-0248.2005.00752.X