Quantifiler ® Duo DNA Quantification Kit: A Guiding Tool for Short Tandem Repeat Genotyping of Forensic Samples

作者: Maura Barbisin , Rixun Fang , Manohar R Furtado , Jaiprakash G Shewale

DOI: 10.4172/2157-7145.1000118

关键词:

摘要: Forensic analysts routinely encounter samples containing mixtures of DNA from male and female contributors PCR inhibitors due to exposure environmental insults. In order select the appropriate STR analysis methodology for such obtain optimal results at first pass, it is desirable determine relative quantities detect presence an early stage in sample processing workflow. Here we describe a multiplex real-time assay that can provide desired information single reaction. Briefly, simultaneous quantification human achieved by measuring RPPH1 target SRY male-specific target. At same time synthetic sequence co-amplified as Internal Control (IPC) inhibitors. The has good dynamic range (0.023–50 ng/μL) 25 pg/μL ten thousand-fold excess DNA. addition, ability predict inhibition was demonstrated shifted IPC C T values increasing hematin. All showed correlation with downstream profiles obtained large set various types therefore demonstrating this be considered guiding tool performance genotyping kits forensic samples.

参考文章(8)
Marcia J. LaFountain, Margaret B. Schwartz, Pamela A. Svete, Mary A. Walkinshaw, Eric Buel, TWGDAM Validation of the AmpFℓSTR Profiler Plus and AmpF∓STR COfiler STR Multiplex Systems Using Capillary Electrophoresis Journal of Forensic Sciences. ,vol. 46, pp. 1191- 1198 ,(2001) , 10.1520/JFS15120J
Sapna Vijayakumar, Devon C. Hall, Xavier T. Reveles, Dean A. Troyer, Ian M. Thompson, Dawn Garcia, RuiHua Xiang, Robin J. Leach, Teresa L. Johnson-Pais, Susan L. Naylor, Detection of Recurrent Copy Number Loss at Yp11.2 Involving TSPY Gene Cluster in Prostate Cancer Using Array-Based Comparative Genomic Hybridization Cancer Research. ,vol. 66, pp. 4055- 4064 ,(2006) , 10.1158/0008-5472.CAN-05-3822
Jerilyn A. Walker, Dale J. Hedges, Benjamin P. Perodeau, Kate E. Landry, Nadica Stoilova, Meredith E. Laborde, Jaiprakash Shewale, Sudhir K. Sinha, Mark A. Batzer, Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: application in human identification. Analytical Biochemistry. ,vol. 337, pp. 89- 97 ,(2005) , 10.1016/J.AB.2004.09.036
Robert L. Green, Ines C. Roinestad, Cherisse Boland, Lori K. Hennessy, Developmental validation of the quantifiler real-time PCR kits for the quantification of human nuclear DNA samples. Journal of Forensic Sciences. ,vol. 50, pp. 809- 825 ,(2005) , 10.1520/JFS2004478
Jaiprakash G. Shewale, Elaine Schneida, Jonathan Wilson, Jerilyn A. Walker, Mark A. Batzer, Sudhir K. Sinha, Human Genomic DNA Quantitation System, H-Quant: Development and Validation for Use in Forensic Casework Journal of Forensic Sciences. ,vol. 52, pp. 364- 370 ,(2007) , 10.1111/J.1556-4029.2006.00369.X
Jaiprakash G. Shewale, Huma Nasir, Elaine Schneida, Ann Marie Gross, Bruce Budowle, Sudhir K. Sinha, Y-Chromosome STR System, Y-PLEX™ 12, for Forensic Casework: Development and Validation Journal of Forensic Sciences. ,vol. 49, pp. 1- 13 ,(2004) , 10.1520/JFS2004024
Benjamin E. Krenke, Allan Tereba, Stacey J. Anderson, Eric Buel, Sherry Culhane, Carla J. Finis, Christine S. Tomsey, Jeffrey M. Zachetti, Arni Masibay, Dawn R. Rabbach, Elizabeth A. Amiott, Cynthia J. Sprecher, Validation of a 16-locus fluorescent multiplex system. Journal of Forensic Sciences. ,vol. 47, pp. 773- 785 ,(2002) , 10.1520/JFS15445J
Sudhir K. Sinha, Huma Nasir, Ann M. Gross, Bruce Budowle, Jaiprakash G. Shewale, Development and validation of the Y-PLEX 5, a Y-chromosome STR genotyping system, for forensic casework. Journal of Forensic Sciences. ,vol. 48, pp. 985- 1000 ,(2003) , 10.1520/JFS2002346