Test Samples for Optimizing STORM Super-Resolution Microscopy

作者: Daniel J. Metcalf , Rebecca Edwards , Neelam Kumarswami , Alex E. Knight

DOI: 10.3791/50579

关键词:

摘要: STORM is a recently developed super-resolution microscopy technique with up to 10 times better resolution than standard fluorescence techniques. However, as the image acquired in very different way normal, by building an molecule-by-molecule, there are some significant challenges for users trying optimize their acquisition. In order aid this process and gain more insight into how works we present preparation of 3 test samples methodology acquiring processing images typical resolutions between 30-50 nm. By combining use freely available rainSTORM software it possible obtain great deal information about quality resolution. Using these metrics then imaging procedure from optics, sample preparation, dye choice, buffer conditions, acquisition settings. We also show examples common problems that result poor quality, such lateral drift, where moves during density related resulting 'mislocalization' phenomenon.

参考文章(50)
Current protocols in cytometry John Wiley & Sons, Inc.. ,(2001) , 10.1002/0471142956
S. WOLTER, M. SCHÜTTPELZ, M. TSCHEREPANOW, S. VAN DE LINDE, M. HEILEMANN, M. SAUER, Real-time computation of subdiffraction-resolution fluorescence images. Journal of Microscopy. ,vol. 237, pp. 12- 22 ,(2010) , 10.1111/J.1365-2818.2009.03287.X
M. Bates, B. Huang, G. T. Dempsey, X. Zhuang, Multicolor Super-Resolution Imaging with Photo-Switchable Fluorescent Probes Science. ,vol. 317, pp. 1749- 1753 ,(2007) , 10.1126/SCIENCE.1146598
Manuel F Juette, Travis J Gould, Mark D Lessard, Michael J Mlodzianoski, Bhupendra S Nagpure, Brian T Bennett, Samuel T Hess, Joerg Bewersdorf, Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples Nature Methods. ,vol. 5, pp. 527- 529 ,(2008) , 10.1038/NMETH.1211
Sang Hak Lee, Murat Baday, Marco Tjioe, Paul D. Simonson, Ruobing Zhang, En Cai, Paul R. Selvin, Using fixed fiduciary markers for stage drift correction Optics Express. ,vol. 20, pp. 12177- 12183 ,(2012) , 10.1364/OE.20.012177
Mark Bates, Graham T. Dempsey, Kok Hao Chen, Xiaowei Zhuang, Multicolor super-resolution fluorescence imaging via multi-parameter fluorophore detection. ChemPhysChem. ,vol. 13, pp. 99- 107 ,(2012) , 10.1002/CPHC.201100735
Seamus J Holden, Stephan Uphoff, Achillefs N Kapanidis, DAOSTORM: an algorithm for high- density super-resolution microscopy Nature Methods. ,vol. 8, pp. 279- 280 ,(2011) , 10.1038/NMETH0411-279
G. Shtengel, J. A. Galbraith, C. G. Galbraith, J. Lippincott-Schwartz, J. M. Gillette, S. Manley, R. Sougrat, C. M. Waterman, P. Kanchanawong, M. W. Davidson, R. D. Fetter, H. F. Hess, Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 3125- 3130 ,(2009) , 10.1073/PNAS.0813131106
Michael J Rust, Mark Bates, Xiaowei Zhuang, Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) Nature Methods. ,vol. 3, pp. 793- 796 ,(2006) , 10.1038/NMETH929
Travis J Gould, Vladislav V Verkhusha, Samuel T Hess, Imaging biological structures with fluorescence photoactivation localization microscopy Nature Protocols. ,vol. 4, pp. 291- 308 ,(2009) , 10.1038/NPROT.2008.246