A genome-wide scalable SNP genotyping assay using microarray technology

作者: Kevin L Gunderson , Frank J Steemers , Grace Lee , Leo G Mendoza , Mark S Chee

DOI: 10.1038/NG1547

关键词:

摘要: … For the analysis of concordance of HapMap quality control SNPs with the GoldenGate assay, we used 726 of 819 SNP assays. Of the 93 SNP assays that we excluded, 92 were not …

参考文章(37)
Hacker Gw, High performance Nanogold-silver in situ hybridisation. European Journal of Histochemistry. ,vol. 42, pp. 111- 120 ,(1998)
Daniel Pinkel, Richard Segraves, Damir Sudar, Steven Clark, Ian Poole, David Kowbel, Colin Collins, Wen-Lin Kuo, Chira Chen, Ye Zhai, Shanaz H. Dairkee, Britt-marie Ljung, Joe W. Gray, Donna G. Albertson, High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nature Genetics. ,vol. 20, pp. 207- 211 ,(1998) , 10.1038/2524
Mark J. Daly, John D. Rioux, Stephen F. Schaffner, Thomas J. Hudson, Eric S. Lander, High-resolution haplotype structure in the human genome. Nature Genetics. ,vol. 29, pp. 229- 232 ,(2001) , 10.1038/NG1001-229
Mark N. Bobrow, Krista J. Shaughnessy, Gerald J. Litt, Catalyzed reporter deposition, a novel method of signal amplification. II. Application to membrane immunoassays. Journal of Immunological Methods. ,vol. 137, pp. 103- 112 ,(1991) , 10.1016/0022-1759(91)90399-Z
Claire L. Simpson, Valerie K. Hansen, Pak C. Sham, Andrew Collins, John F. Powell, Ammar Al-Chalabi, MaGIC: a program to generate targeted marker sets for genome-wide association studies. BioTechniques. ,vol. 37, pp. 996- 999 ,(2004) , 10.2144/04376BIN03
Gillian C.L. Johnson, Laura Esposito, Bryan J. Barratt, Annabel N. Smith, Joanne Heward, Gianfranco Di Genova, Hironori Ueda, Heather J. Cordell, Iain A. Eaves, Frank Dudbridge, Rebecca C.J. Twells, Felicity Payne, Wil Hughes, Sarah Nutland, Helen Stevens, Phillipa Carr, Eva Tuomilehto-Wolf, Jaakko Tuomilehto, Stephen C.L. Gough, David G. Clayton, John A. Todd, Haplotype tagging for the identification of common disease genes Nature Genetics. ,vol. 29, pp. 233- 237 ,(2001) , 10.1038/NG1001-233
DAN Y. WU, G. NOZARI, MONICA SCHÖLD, BRENDA J. CONNER, R. BRUCE WALLACE, Direct analysis of single nucleotide variation in human DNA and RNA using in situ dot hybridization. DNA (Mary Ann Liebert, Inc.). ,vol. 8, pp. 135- 142 ,(1989) , 10.1089/DNA.1.1989.8.135
Kakuturu VN Rao, Priscilla Wilkins Stevens, Jeff G Hall, Victor Lyamichev, Bruce P Neri, David M Kelso, Genotyping single nucleotide polymorphisms directly from genomic DNA by invasive cleavage reaction on microspheres Nucleic Acids Research. ,vol. 31, ,(2003) , 10.1093/NAR/GNG066
Paul Hardenbol, Johan Banér, Maneesh Jain, Mats Nilsson, Eugeni A Namsaraev, George A Karlin-Neumann, Hossein Fakhrai-Rad, Mostafa Ronaghi, Thomas D Willis, Ulf Landegren, Ronald W Davis, Multiplexed genotyping with sequence-tagged molecular inversion probes Nature Biotechnology. ,vol. 21, pp. 673- 678 ,(2003) , 10.1038/NBT821
Giulia C Kennedy, Hajime Matsuzaki, Shoulian Dong, Wei-min Liu, Jing Huang, Guoying Liu, Xing Su, Manqiu Cao, Wenwei Chen, Jane Zhang, Weiwei Liu, Geoffrey Yang, Xiaojun Di, Thomas Ryder, Zhijun He, Urvashi Surti, Michael S Phillips, Michael T Boyce-Jacino, Stephen PA Fodor, Keith W Jones, Large-scale genotyping of complex DNA. Nature Biotechnology. ,vol. 21, pp. 1233- 1237 ,(2003) , 10.1038/NBT869