Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres.

作者: Craig E. Kundrot , Frederic M. Richards

DOI: 10.1016/0022-2836(87)90634-6

关键词:

摘要: Abstract The crystal structure of tetragonal hen egg-white lysozyme at a hydrostatic pressure 1000 atmospheres has been determined by X-ray diffraction to nominal resolution 2 A. crystals, originally grown in 0.83 m -NaCl, had be transferred 1.4 -NaCl prevent cracking 300 400 atm. and b axes the unit cell contracted 0.6%, whilst c axis increased 0.1%. volume 1.1%. Both 1 atm structures were refined restrained least-squares yield final R factors 14.9% each case. Since data collected an accurate difference protocol, change is considered more than absolute structure. probable accuracy atomic shifts shown ±0.06 estimated decrease whole molecule corresponded isothermal compressibility 4.7 × 10 −3 kbar −1 . contraction was non-uniformly distributed. Domain (residues 40 88) essentially incompressible, domain 39, 89 129) 5.7 interdomain region also compressible. average B factor decreased about A atm, but there wide range decreases increases individual values. pressure-induced deformation analyzed with distance matrices. beta-sheet 42 60) helix 24 36) deformed least under pressure. other helices one loop 61 87) actually appeared expand. main-chain atoms used perform superposition models. root-mean-square shift for all 0.2 A, few moving There no evidence co-ordinated movement hinge defined alpha carbon 38 97. included 151 163 ordered water molecules, respectively. changes these molecules mean solvent will described elsewhere.

参考文章(32)
Frederic M. Richards, Calculation of molecular volumes and areas for structures of known geometry Methods in Enzymology. ,vol. 115, pp. 440- 464 ,(1985) , 10.1016/0076-6879(85)15032-9
R. Langridge, D.A. Marvin, W.E. Seeds, H.R. Wilson, C.W. Hooper, M.H.F. Wilkins, L.D. Hamilton, The molecular configuration of deoxyribonucleic acid Journal of Molecular Biology. ,vol. 2, pp. 38- IN12 ,(1960) , 10.1016/S0022-2836(60)80005-8
Robert Huber, Dietmar Kukla, Wolfram Bode, Peter Schwager, Klaus Bartels, Johann Deisenhofer, Wolfgang Steigemann, Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor: II. Crystallographic refinement at 1.9 Å resolution Journal of Molecular Biology. ,vol. 89, pp. 73- 101 ,(1974) , 10.1016/0022-2836(74)90163-6
Gordon Alderton, H.L. Fevold, DIRECT CRYSTALLIZATION OF LYSOZYME FROM EGG WHITE AND SOME CRYSTALLINE SALTS OF LYSOZYME Journal of Biological Chemistry. ,vol. 164, pp. 1- 5 ,(1946) , 10.1016/S0021-9258(18)43040-2
Wayne A. Hendrickson, Stereochemically restrained refinement of macromolecular structures. Methods in Enzymology. ,vol. 115, pp. 252- 270 ,(1985) , 10.1016/0076-6879(85)15021-4
F J Millero, G K Ward, P Chetirkin, Partial specific volume, expansibility, compressibility, and heat capacity of aqueous lysozyme solutions. Journal of Biological Chemistry. ,vol. 251, pp. 4001- 4004 ,(1976) , 10.1016/S0021-9258(17)33347-1
T. A. Jones, A graphics model building and refinement system for macromolecules Journal of Applied Crystallography. ,vol. 11, pp. 268- 272 ,(1978) , 10.1107/S0021889878013308
J. L. Chambers, R. M. Stroud, The accuracy of refined protein structures: comparison of two independently refined models of bovine trypsin Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry. ,vol. 35, pp. 1861- 1874 ,(1978) , 10.1107/S0567740879007925