Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae

Pablo I Nikel , Danilo Pérez-Pantoja , Víctor de Lorenzo ,
Philosophical Transactions of the Royal Society B 368 ( 1616) 20120377 -20120377

59
2013
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes

Juhyun Kim , Juan Carlos Oliveros , Pablo I Nikel , Víctor de Lorenzo
Environmental Microbiology Reports 5 ( 6) 883 -891

65
2013
The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates.

Özlem Akkaya , Danilo R Pérez-Pantoja , Belén Calles , Pablo I Nikel
Mbio 9 ( 4)

32
2018
Making green polymers even greener: towards sustainable production of polyhydroxyalkanoates from agroindustrial by-products

José GC Gomez , Beatriz S Méndez , Pablo I Nikel , M Julia Pettinari
Advances in applied biotechnology 2012

64
2012
An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida.

Christos Batianis , Ekaterina Kozaeva , Stamatios G Damalas , María Martín‐Pascual
Microbial Biotechnology 13 ( 2) 368 -385

14
2020
41
2013
Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida

Daniel C Volke , Justine Turlin , Viviënne Mol , Pablo I Nikel
Microbial Biotechnology 13 ( 1) 222 -232

23
2020
Functional implementation of a linear glycolysis for sugar catabolism in Pseudomonas putida

Alberto Sánchez-Pascuala , Lorena Fernández-Cabezón , Víctor de Lorenzo , Pablo I Nikel
Metabolic Engineering 54 200 -211

24
2019
Refactoring the Embden–Meyerhof–Parnas Pathway as a Whole of Portable GlucoBricks for Implantation of Glycolytic Modules in Gram-Negative Bacteria

Alberto Sánchez-Pascuala , Víctor de Lorenzo , Pablo I Nikel ,
ACS Synthetic Biology 6 ( 5) 793 -805

37
2017
Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds

Pablo I Nikel , Danilo Pérez‐Pantoja , Víctor de Lorenzo ,
Environmental Microbiology 18 ( 10) 3565 -3582

26
2016
Metabolic Flux Analysis of Escherichia coli creB and arcA Mutants Reveals Shared Control of Carbon Catabolism under Microaerobic Growth Conditions

Pablo I Nikel , Jiangfeng Zhu , Ka-Yiu San , Beatriz S Méndez
Journal of Bacteriology 191 ( 17) 5538 -5548

38
2009
Escherichia coli arcA mutants: metabolic profile characterization of microaerobic cultures using glycerol as a carbon source.

Pablo I Nikel , M Julia Pettinari , M Cecilia Ramírez , Miguel A Galvagno
Journal of Molecular Microbiology and Biotechnology 15 ( 1) 48 -54

50
2008
High-Performance Biocomputing in Synthetic Biology-Integrated Transcriptional and Metabolic Circuits.

Angel Goñi-Moreno , Pablo I Nikel ,
Frontiers in Bioengineering and Biotechnology 7 40 -40

17
2019
Modular (de) construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing

Daniel C Volke , Román A Martino , Ekaterina Kozaeva , Andrea M Smania
Nature Communications 13 ( 1) 3026 -3026

49
2022
dye (arc) Mutants: insights into an unexplained phenotype and its suppression by the synthesis of poly (3-hydroxybutyrate) in Escherichia coli recombinants.

Jimena A Ruiz , Rubén O Fernández , Pablo I Nikel , Beatriz S Méndez
Fems Microbiology Letters 258 ( 1) 55 -60

30
2006
Growth-coupled selection of synthetic modules to accelerate cell factory development

Enrico Orsi , Nico J Claassens , Pablo I Nikel , Steffen N Lindner
Nature communications 12 ( 1) 5295 -5295

44
2021
Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida

Ekaterina Kozaeva , Svetlana Volkova , Marta RA Matos , Mariela P Mezzina
Metabolic Engineering 67 373 -386

44
2021
Evolutionary Approaches for Engineering Industrially Relevant Phenotypes in Bacterial Cell Factories

Lorena Fernández‐Cabezón , Antonin Cros , Pablo I Nikel ,
Biotechnology Journal 14 ( 9) 1800439

32
2019
SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

Esteban Martínez-García , Sofía Fraile , Elena Algar , Tomás Aparicio
Nucleic Acids Research 51 ( D1) D1558 -D1567

37
2023