Interkingdom metabolic transformations captured by microbial imaging mass spectrometry

W. J. Moree , V. V. Phelan , C.-H. Wu , N. Bandeira
Proceedings of the National Academy of Sciences of the United States of America 109 ( 34) 13811 -13816

170
2012
MS/MS networking guided analysis of molecule and gene cluster families

D. D. Nguyen , C.-H. Wu , W. J. Moree , A. Lamsa
Proceedings of the National Academy of Sciences of the United States of America 110 ( 28) 201303471

253
2013
Primer on Agar-Based Microbial Imaging Mass Spectrometry

J. Y. Yang , V. V. Phelan , R. Simkovsky , J. D. Watrous
Journal of Bacteriology 194 ( 22) 6023 -6028

100
2012
Impact of a Transposon Insertion in phzF2 on the Specialized Metabolite Production and Interkingdom Interactions of Pseudomonas aeruginosa

V. V. Phelan , W. J. Moree , J. Aguilar , D. S. Cornett
Journal of Bacteriology 196 ( 9) 1683 -1693

23
2014
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Mingxun Wang , Jeremy J Carver , Vanessa V Phelan , Laura M Sanchez
Nature Biotechnology 34 ( 8) 828 -837

2,378
2016
Microbial metabolic exchange in 3D

Jeramie D Watrous , Vanessa V Phelan , Cheng-Chih Hsu , Wilna J Moree
The ISME Journal 7 ( 4) 770 -780

59
2013
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Mingxun Wang , Jeremy J Carver , Vanessa V Phelan , Laura M Sanchez
Nature Biotechnology 34 ( 8) 828 -837

2,378
2016
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

Robert A Quinn , Vanessa V Phelan , Katrine L Whiteson , Neha Garg
The ISME Journal 10 ( 6) 1483 -1498

91
2016
Microbial metabolic exchange—the chemotype-to-phenotype link

Vanessa V Phelan , Wei-Ting Liu , Kit Pogliano , Pieter C Dorrestein
Nature Chemical Biology 8 ( 1) 26 -35

161
2012
A universal language for finding mass spectrometry data patterns

Alan K Jarmusch , Allegra T Aron , Daniel Petras , Vanessa V Phelan
bioRxiv 2022 -08

6
2022
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

Daniel Petras , Vanessa V Phelan , Deepa Acharya , Andrew E Allen
Nature methods 19 ( 2) 134 -136

15
2022
Impact of artificial sputum medium formulation on Pseudomonas aeruginosa secondary metabolite production

Rachel L Neve , Brent D Carrillo , Vanessa V Phelan
Journal of Bacteriology 203 ( 21) 10 -1128

10
2021
Model systems to study the chronic, polymicrobial infections in cystic fibrosis: current approaches and exploring future directions

George A O’Toole , Aurélie Crabbé , Rolf Kümmerli , John J LiPuma
MBio 12 ( 5) 10.1128/mbio. 01763 -21

31
2021
16
2023
Feature-based Molecular Networking in the GNPS Analysis Environment

Louis-Félix Nothias , Daniel Petras , Robin Schmid , Kai Dührkop
bioRxiv 812404

457
2019
Feature-based molecular networking for metabolite annotation

Vanessa V Phelan
Computational Methods and Data Analysis for Metabolomics 227 -243

30
2020
Spray-based application of matrix to agar-based microbial samples for reproducible sample adherence in MALDI MSI

Justin N Jens , Daniel J Breiner , Vanessa V Phelan
Journal of the American Society for Mass Spectrometry 33 ( 4) 731 -734

4
2022
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits

Rachel L Neve , Emily Giedraitis , Madeline S Akbari , Shirli Cohen
Msystems 9 ( 5) e00339 -24

2024
ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization

Mohammad Reza Zare Shahneh , Michael Strobel , Giovanni Andrea Vitale , Christian Geibel
Journal of the American Society for Mass Spectrometry

2024