Abstract P327: COPa Library: A Proteomic Knowledge Base for Cardiovascular Biology and Medicine

Henning Hermjakob , Rolf Apweiler , Nobel Zong , Peipei Ping
Circulation Research 109

1
2011
Can the false-discovery rate be misleading?

Rodrigo Barboza , Daniel Cociorva , Tao Xu , Valmir C. Barbosa
Proteomics 11 ( 20) 4105 -4108

36
2011
PatternLab: from mass spectra to label-free differential shotgun proteomics.

Paulo C. Carvalho , Juliana S. G. Fischer , Tao Xu , John R. Yates
Current protocols in human genetics 40 ( 1)

47
2012
Cell cycle phosphorylation of mitotic exit network (MEN) proteins.

Michele H. Jones , Jamie M. Keck , Catherine C. L. Wong , Tao Xu
Cell Cycle 10 ( 20) 3435 -3440

16
2011
Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility.

Arthur M Talman , Judith H Prieto , Sara Marques , Ceereena Ubaida-Mohien
Malaria Journal 13 ( 1) 315 -315

36
2014
ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.

Yaoyang Zhang , Tao Xu , Bing Shan , Jonathan Hart
Journal of Proteomics 129 25 -32

15
2015
A quantitative analysis software tool for mass spectrometry–based proteomics

Sung Kyu Park , John D Venable , Tao Xu , John R Yates
Nature Methods 5 ( 4) 319 -322

322
2008
Toward objective evaluation of proteomic algorithms

John R Yates , Sung Kyu Robin Park , Claire M Delahunty , Tao Xu
Nature Methods 9 ( 5) 455 -456

28
2012
Automatic validation of phosphopeptide identifications from tandem mass spectra.

Bingwen Lu , Cristian Ruse , Tao Xu , Sung Kyu Park
Analytical Chemistry 79 ( 4) 1301 -1310

105
2007
Anion and Cation Mixed-Bed Ion Exchange for Enhanced Multidimensional Separations of Peptides and Phosphopeptides

Akira Motoyama , Tao Xu , Cristian I. Ruse , James A. Wohlschlegel
Analytical Chemistry 79 ( 10) 3623 -3634

149
2007
Identification of N-terminally arginylated proteins and peptides by mass spectrometry.

Tao Xu , Catherine C L Wong , Anna Kashina , John R Yates
Nature Protocols 4 ( 3) 325 -332

38
2009
Comparison of different signal thresholds on data dependent sampling in orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures

Catherine C. L. Wong , Daniel Cociorva , John D. Venable , Tao Xu
Journal of the American Society for Mass Spectrometry 20 ( 8) 1405 -1414

28
2009
Calcium Signaling through CaMKII Regulates Hepatic Glucose Production in Fasting and Obesity

Lale Ozcan , Catherine C.L. Wong , Gang Li , Tao Xu
Cell Metabolism 15 ( 5) 739 -751

207
2012
YADA: A tool for taking the most out of high-resolution spectra

Paulo C. Carvalho , Tao Xu , Xuemei Han , Daniel Cociorva
Bioinformatics 25 ( 20) 2734 -2736

57
2009
Functional analysis of the ver gene using antisense transgenic wheat

Kang Chong , Shi-lai Bao , Tao Xu , Ke-hui Tan
Physiologia Plantarum 102 ( 1) 87 -92

66
1998
XDIA: improving on the label-free data-independent analysis.

Paulo C. Carvalho , Xuemei Han , Tao Xu , Daniel Cociorva
Bioinformatics 26 ( 6) 847 -848

73
2010
A novel Rac1 GAP splice variant relays poly-Ub accumulation signals to mediate Rac1 inactivation

Timothy Y. Huang , Sarah Michael , Tao Xu , Ali Sarkeshik
Molecular Biology of the Cell 24 ( 3) 194 -209

14
2013
Ulysses - an application for the projection of molecular interactions across species

Danielle Kemmer , Yong Huang , Sohrab P Shah , Jonathan Lim
Genome Biology 6 ( 12) 1 -11

26
2005
Central Limit Theorem as an Approximation for Intensity-Based Scoring Function

Rovshan Sadygov , James Wohlschlegel , Sung Kyu Park , Tao Xu
Analytical Chemistry 78 ( 1) 89 -95

28
2006
Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra.

John D. Venable , Tao Xu , Daniel Cociorva , John R. Yates
Analytical Chemistry 78 ( 6) 1921 -1929

26
2006