Identification of Novel Targets for miR-29a Using miRNA Proteomics

Rhishikesh Bargaje , Shivani Gupta , Ali Sarkeshik , Robin Park
PLoS ONE 7 ( 8) e43243

37
2012
Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.

Greg T. Cantin , Wei Yi , Bingwen Lu , Sung Kyu Park
Journal of Proteome Research 7 ( 3) 1346 -1351

136
2008
Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT.

Bryan R. Fonslow , Paulo C. Carvalho , Katrina Academia , Steve Freeby
Journal of Proteome Research 10 ( 8) 3690 -3700

72
2011
Characterization, Design, and Function of the Mitochondrial Proteome: From Organs to Organisms

Christopher Lotz , Amanda J. Lin , Caitlin M. Black , Jun Zhang
Journal of Proteome Research 13 ( 2) 433 -446

47
2014
Brain Proteome Changes Induced by Olfactory Learning in Drosophila.

Yaoyang Zhang , Bing Shan , Monica Boyle , Jacqueline Liu
Journal of Proteome Research 13 ( 8) 3763 -3770

6
2014
45
2011
Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT.

Bryan R. Fonslow , Sherry M. Niessen , Meha Singh , Catherine C. L. Wong
Journal of Proteome Research 11 ( 5) 2697 -2709

40
2012
A Cell Cycle Phosphoproteome of the Yeast Centrosome

Jonathan Binkley , Tao Xu , Mario Niepel , Michael P Rout
Dev. Cell 16 844 -844

2009
ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program

Tao Xu , JD Venable , S Kyu Park , D Cociorva
Molecular & cellular proteomics 5 ( 10) S174 -S174

259
2006
Shotgun protein identification and quantification by mass spectrometry in neuroproteomics

Bingwen Lu , Tao Xu , Sung Kyu Park , Daniel B McClatchy
Neuroproteomics: Methods and Protocols 229 -259

12
2009
ProLuCID: using probability and statistical scores to improve sensitivity and specificity of CID and ETD database search results

Tao Xu , John Venable , Sung Kyu Park , Daniel Cociorva
Mol Cell Proteomics 5 S174 -S174

2
2006
Search Engine Processor: filtering and organizing PSMs

Paulo C Carvalho , Juliana SG Fischer , Tao Xu , Daniel Cociorva
Proteomics

132
2012
Digestion and depletion of abundant proteins improves proteomic coverage

Bryan R Fonslow , Benjamin D Stein , Kristofor J Webb , Tao Xu
Nature Methods 10 ( 1) 54 -56

116
2012
A Modified MuDPIT Separation Identified 4,488 Proteins in a System Wide Analysis of Quiescence in Yeast

Kristofor J Webb , Tao Xu , Sung Kyu Park , John R Yates
Journal of Proteome Research

85
2013
Shotgun protein identification and quantification by mass spectrometry

Bingwen Lu , Tao Xu , Sung Kyu Park , JR Yates 3rd
Methods Mol. Biol 564 261 -288

38
2009
Insecticidal cry toxins

Kenneth E Narva , Huarong Li , Sek Yee Tan , Tao Xu

3
2019
Binary insecticidal Cry toxins

Kenneth E Narva , Huarong Li , Sek Yee Tan , Tao Xu

1
2021
Binary insecticidal Cry toxins

Kenneth Narva , Huarong Li , Sek Yee Tan , Tao Xu

2023
Binary insecticidal cry toxins

Kenneth E Narva , Huarong Li , Sek Yee TAN , Tao Xu

2018