A Stevedore's Protein Knot
Daniel Bölinger , Joanna I. Sułkowska , Hsiao-Ping Hsu , Leonid A. Mirny
PLoS Computational Biology 6 ( 4) e1000731
120
2010
Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression
Federico Bocci , Herbert Levine , José N. Onuchic , Mohit Kumar Jolly
Stem cell reports 5 ( 1) 11 -21
16
2019
Modeling Mayaro and Chikungunya Control Strategies in Rio de Janeiro Outbreaks
Esteban Dodero-Rojas , Luiza G Ferreira , Vitor BP Leite , José N Onuchic
bioRxiv 766105
1
2019
Designing bacterial signaling interactions with coevolutionary landscapes.
Ryan R. Cheng , Ellinor Haglund , Nicholas S. Tiee , Faruck Morcos
PLOS ONE 13 ( 8)
4
2018
Conformational transitions of adenylate kinase: switching by cracking.
Paul C. Whitford , Osamu Miyashita , Yaakov Levy , José N. Onuchic
Journal of Molecular Biology 366 ( 5) 1661 -1671
232
2007
Folding time predictions from all-atom replica exchange simulations.
Sichun Yang , José N. Onuchic , Angel E. García , Herbert Levine
Journal of Molecular Biology 372 ( 3) 756 -763
65
2007
The Folding Energy Landscape of the Dimerization Domain of Escherichia coli Trp Repressor: A Joint Experimental and Theoretical Investigation
B. Robert Simler , Yaakov Levy , José N. Onuchic , C. Robert Matthews
Journal of Molecular Biology 363 ( 1) 262 -278
17
2006
Towards Decoding the Metabolic Plasticity in Cancer: Coupling of Gene Regulation and Metabolic Pathways
Dongya Jia , Mingyang Lu , Kwang Hwa Jung , Jun Hyoung Park
bioRxiv 428367
2018
Quantum tunneling in biological reactions: the interplay between theory and experiments
José N. Onuchic , Chigusa Kobayashi , Kim K. Baldridge
Journal of the Brazilian Chemical Society 19 ( 2) 206 -210
11
2008
Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model.
Mingchen Chen , Xingcheng Lin , Weihua Zheng , José N. Onuchic
Journal of Physical Chemistry B 120 ( 33) 8557 -8565
20
2016
Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin
Xingcheng Lin , Jeffrey K. Noel , Qinghua Wang , Jianpeng Ma
Journal of Physical Chemistry B 120 ( 36) 9654 -9660
9
2016
Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins.
Mingchen Chen , Xingcheng Lin , Wei Lu , José N. Onuchic
Journal of Physical Chemistry B 121 ( 15) 3473 -3482
11
2017
Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling
Federico Bocci , Mohit K Jolly , Satyendra C Tripathi , Mitzi Aguilar
Journal of the Royal Society Interface 14 ( 136) 20170512
78
2017
The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer
Fang Bai , Faruck Morcos , Yang-Sung Sohn , Merav Darash-Yahana
Proceedings of the National Academy of Sciences of the United States of America 112 ( 12) 3698 -3703
44
2015
Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision
Marcelo Boareto , Mohit Kumar Jolly , Eshel Ben-Jacob , José N. Onuchic
Proceedings of the National Academy of Sciences of the United States of America 112 ( 29) 201511814
71
2015
The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells
Anat Iosub-Amir , Fang Bai , Yang-Sung Sohn , Luhua Song
Chemical Science 10 ( 3) 665 -673
6
2019
Magnesium Dependence of the RNA Free Energy Landscape
Ryan L. Hayes , Jeffrey K. Noel , Ana Mandic , Paul C. Whitford
Biophysical Journal 108 ( 2) 235a
2
2015
Generalized Manning Condensation Model Captures the RNA Ion Atmosphere.
Ryan L. Hayes , Jeffrey K. Noel , Ana Mandic , Paul C. Whitford
Physical Review Letters 114 ( 25) 258105 -258105
38
2015
Protein Structure Prediction in CASP13 Using AWSEM-Suite.
Shikai Jin , Mingchen Chen , Xun Chen , Carlos Bueno
Journal of Chemical Theory and Computation 16 ( 6) 3977 -3988
5
2020
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
Andreas H. Ratje , Justus Loerke , Aleksandra Mikolajka , Matthias Brünner
Nature 468 ( 7324) 713 -716
288
2010