A method to analyze multi-pathway effects on protein mediated donor-acceptor coupling interactions
Spiros S. Skourtis , JoséN. Onuchic , David N. Beratan
Inorganica Chimica Acta 243 167 -175
16
1996
Estimating the effect of protein dynamics on electron transfer to the special pair in the photosynthetic reaction center
Adelia J.A. Aquino , Paul Beroza , Jeffrey Reagan , JoséN. Onuchic
Chemical Physics Letters 275 ( 3) 181 -187
25
1997
SMOG@ctbp: simplified deployment of structure-based models in GROMACS.
Jeffrey K. Noel , Paul C. Whitford , Karissa Y. Sanbonmatsu , Jos� N. Onuchic
Nucleic Acids Research 38 657 -661
232
2010
The Role of Exosome-Mediated Cell-Cell Communication in Inducing Phenotypic Changes
Mingyang Lu , Michela Capello , Herbert Levine , Samir M. Hanash
Biophysical Journal 110 ( 3)
2016
Altered backbone and side-chain interactions result in route heterogeneity during the folding of interleukin-1β (IL-1β).
Dominique T. Capraro , Heiko Lammert , David K. Heidary , Melinda Roy
Biophysical Journal 105 ( 4) 975 -983
4
2013
Knotting pathways in proteins
Joanna I. Sułkowska , Jeffrey K. Noel , César A. Ramírez-Sarmiento , Eric J. Rawdon
Biochemical Society Transactions 41 ( 2) 523 -527
36
2013
Reduced Model Captures Mg2+-RNA Interaction Free Energy of Riboswitches
Ryan L. Hayes , Jeffrey K. Noel , Paul C. Whitford , Udayan Mohanty
Biophysical Journal 106 ( 7) 1508 -1519
33
2014
Intercellular Stress Reconstitution from Traction Force Data
Juliane Zimmermann , Ryan L. Hayes , Markus Basan , José N. Onuchic
Biophysical Journal 107 ( 3) 548 -554
26
2014
Connecting thermal and mechanical protein (un)folding landscapes.
Li Sun , Jeffrey K. Noel , Joanna I. Sulkowska , Herbert Levine
Biophysical Journal 107 ( 12) 2950 -2961
26
2014
A Structural Perspective on the Dynamics of Kinesin Motors
Changbong Hyeon , José N. Onuchic
Biophysical Journal 101 ( 11) 2749 -2759
27
2011
Electron tunneling pathways in proteins: influences on the transfer rate.
David N. Beratan , Jos� Nelson Onuchic
Photosynthesis Research 22 ( 3) 173 -186
63
1989
Quantum and classical dynamics in biochemical reactions.
William Bialek , William J. Bruno , Julian Joseph , Jos� Nelson Onuchic
Photosynthesis Research 22 ( 1) 15 -27
17
1989
Exploring the protein folding funnel landscape
Nicholas D. Socci , Hugh Nymeyer , JoséNelson Onuchic
Physica D: Nonlinear Phenomena 107 366 -382
17
1997
Pathway analysis of protein electron-transfer reactions.
J N Onuchic , D N Beratan , J R Winkler , H B Gray
Annual Review of Biophysics and Biomolecular Structure 21 ( 1) 349 -377
484
1992
Nonlinear susceptibilities of finite conjugated organic polymers
David N. Beratan , Jose Nelson. Onuchic , Joseph W. Perry
The Journal of Physical Chemistry 91 ( 11) 2696 -2698
144
1987
Magnesium controls aptamer-expression platform switching in the SAM-I riboswitch.
Susmita Roy , Scott P Hennelly , Heiko Lammert , José N Onuchic
Nucleic Acids Research 47 ( 6) 3158 -3170
25
2019
Complexity of design as a factor which breaks the mirror symmetry in protein evolution
Jose' Onuchic , Erik Nelson
APS March Meeting Abstracts
2000
Toward Decoding the Principles of Cancer Metastasis Circuits
Mingyang Lu , Mohit Kumar Jolly , Jose' Onuchic , Eshel Ben-Jacob
Cancer Research 74 ( 17) 4574 -4587
43
2014
Multilevel Modeling To Understand The Folding Hysteresis Of GFP
Shachi Gosavi , Benjamin Andrews , Patricia Jennings , Jose' Onuchic
Biophysical Journal 96 ( 3) 330a
2009
Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
Daniel Schultz , Mingyang Lu , Trevor Stavropoulos , Jose' Onuchic
Scientific Reports 3 ( 1) 1668 -1668
23
2013