MEME Suite: tools for motif discovery and searching

T. L. Bailey , M. Boden , F. A. Buske , M. Frith
Nucleic Acids Research 37 202 -208

8,080
2009
Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data

F. A. Buske , D. C. Bauer , J. S. Mattick , T. L. Bailey
Genome Research 22 ( 7) 1372 -1381

117
2012
PARTICLE triplexes cluster in the tumor suppressor WWOX and may extend throughout the human genome

Valerie Bríd O’Leary , Jan Smida , Fabian Andreas Buske , Laura Garcia Carrascosa
Scientific Reports 7 ( 1) 7163 -7163

11
2017
Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer.

Lisa Horvath , James Kench , Kenneth Lee , Nicola J Armstrong
Nature Communications 8 ( 1) 1346

42
2017
PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation

Valerie Bríd O’Leary , Saak Victor Ovsepian , Laura Garcia Carrascosa , Fabian Andreas Buske
Cell Reports 11 ( 3) 474 -485

115
2015
de Cássia E. Oliveira, F., 315 Dorin, A., 268 Dufton, L., 340

T Akutsu , FF Araújo , C Bakal , M Bellgard

Regulation of immune response genes by endogenous retroviruses

C Loetsch , J Warren , J Parsons , F Buske
EUROPEAN JOURNAL OF IMMUNOLOGY 46 69 -69

2016
Predicting SUMOylation Sites

Denis C. Bauer , Fabian A. Buske , Mikael Bodén
Pattern Recognition in Bioinformatics 5265 28 -40

4
2008
It's about time: Signal recognition in staged models of protein translocation

Fabian A. Buske , Stefan Maetschke , Mikael Bodén
Pattern Recognition 42 ( 4) 567 -574

2009
VariantSpark: population scale clustering of genotype information

Aidan R. O’Brien , Neil F. W. Saunders , Yi Guo , Fabian A. Buske
BMC Genomics 16 ( 1) 1052 -1052

29
2015
Potential in vivo roles of nucleic acid triple-helices

Fabian A. Buske , John S. Mattick , Timothy L. Bailey
RNA Biology 8 ( 3) 427 -439

195
2011
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster

Denis C. Bauer , Fabian A. Buske , Timothy L. Bailey , Mikael Bodén
Neurocomputing 73 ( 13) 2300 -2307

3
2010
NGSANE: A Lightweight Production Informatics Framework for High Throughput Data Analysis

Fabian A. Buske , Hugh J. French , Martin A. Smith , Susan J. Clark
Bioinformatics 30 ( 10) 1471 -1472

20
2014
In silico characterization of protein chimeras: relating sequence and function within the same fold.

Fabian A. Buske , Ricarda Their , Elizabeth M. J. Gillam , Mikael Bodén
Proteins 77 ( 1) 111 -120

12
2009
Assigning roles to DNA regulatory motifs using comparative genomics

Fabian A. Buske , Mikael Bodén , Denis C. Bauer , Timothy L. Bailey
Bioinformatics 26 ( 7) 860 -866

98
2010
Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci.

Fabian A. Buske , Denis C. Bauer , John S. Mattick , Timothy L. Bailey
Bioinformatics 29 ( 15) 1895 -1897

20
2013
Epigenetic priors for identifying active transcription factor binding sites

Gabriel Cuellar-Partida , Fabian A. Buske , Robert C. McLeay , Tom Whitington
Bioinformatics 28 ( 1) 56 -62

99
2012
Genomics and personalised whole-of-life healthcare

Denis C. Bauer , Clara Gaff , Marcel E. Dinger , Melody Caramins
Trends in Molecular Medicine 20 ( 9) 479 -486

15
2014
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

Phillippa C. Taberlay , Joanna Achinger-Kawecka , Aaron T.L. Lun , Fabian A. Buske
Genome Research 26 ( 6) 719 -731

179
2016
Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes

Isye Arieshanti , Mikael Boden , Stefan Maetschke , Fabian A. Buske
computational intelligence in bioinformatics and computational biology 2009 46 -52

2009