An incoherent feedforward loop facilitates adaptive tuning of gene 15 expression 16

Jungeui Hong , Nathan Brandt , Farah Abdul-Rahman , Ally Yang
gene expression 36 ( 37) 38 -38

Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray.

David Gresham , Douglas M Ruderfer , Stephen C Pratt , Joseph Schacherer
Science 311 ( 5769) 1932 -1936

229
2006
Global mapping of transposon location

Abram Gabriel , Johannes Dapprich , Mark Kunkel , David Gresham
PLoS genetics 2 ( 12) e212 -e212

65
2006
Array-based polymorphism mapping at single nucleotide resolution

David Gresham , David Botstein , Leonid Kruglyak , Douglas Ruderfer

2
2009
Genome-Wide mapping of Polymorphisms at Nucleotide Resolution with a Single DNA Array

Leonid Kruglyak , David Botstein , David Gresham , Douglas Ruderfer

2011
The functional basis of adaptive evolution in chemostats

David Gresham , Jungeui Hong
FEMS microbiology reviews 39 ( 1) 2 -16

120
2015
Fluctuating environments maintain genetic diversity through neutral fitness effects and balancing selection

Farah Abdul-Rahman , Daniel Tranchina , David Gresham
Molecular Biology and Evolution 38 ( 10) 4362 -4375

31
2021
Cheating death

David Gresham
Nature Reviews Molecular Cell Biology 4 ( 2) 87 -87

10
2003
DNA microarray-based mutation discovery and genotyping

David Gresham
Molecular Methods for Evolutionary Genetics 179 -191

9
2011
Increased mesoscale diffusivity in response to acute glucose starvation

Ying Xie , David Gresham , Liam J Holt
Micropublication Biology 2023

7
2023
Influenza A virus reassortment is strain dependent

Kishana Y Taylor , Ilechukwu Agu , Ivy José , Sari Mäntynen
PLoS pathogens 19 ( 3) e1011155 -e1011155

6
2023
Best practices in microbial experimental evolution: using reporters and long-read sequencing to identify copy number variation in experimental evolution

Pieter Spealman , Titir De , Julie N Chuong , David Gresham
Journal of Molecular Evolution 91 ( 3) 356 -368

5
2023
Complex genomic rearrangements following selection in a glutamine-limited medium over hundreds of generations

Pieter Spealman , Grace Avecilla , Julia Matthews , Ina Suresh
Microbiology Resource Announcements 11 ( 11) e00729 -22

5
2022
Copy number variation alters local and global mutational tolerance

Grace Avecilla , Pieter Spealman , Julia Matthews , Elodie Caudal
Genome Research 33 ( 8) 1340 -1353

4
2023
mRNA condensation fluidizes the cytoplasm

Ying Xie , Tiewei Liu , David Gresham , Liam J Holt
bioRxiv

4
2023
Social and biological history of the Roma (Gypsies)

Luba Kalaydjieva , Bharti Morar , David Gresham , P Underhill
Acta Myologica 181 -187

4
2001
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference

Andreas Tjärnberg , Maggie Beheler-Amass , Christopher A Jackson , Lionel A Christiaen
Genome biology 25 ( 1) 24 -24

3
2024
Simulation-based inference of evolutionary parameters from adaptation dynamics using neural networks

Grace Avecilla , Julie N Chuong , Fangfei Li , Gavin Sherlock
bioRxiv 2021.09. 30.462581 -2021.09. 30.462581

3
2021
Fitness tracking for adapting populations

David Gresham
Nature 519 ( 7542) 164 -165

3
2015