Nucleic Acid Strand Displacement with Synthetic mRNA Inputs in Living Mammalian Cells.

Gourab Chatterjee , Yuan-Jyue Chen , Georg Seelig
ACS Synthetic Biology 7 ( 12) 2737 -2741

13
2018
Quantifying molecular bias in DNA data storage.

Yuan-Jyue Chen , Christopher N. Takahashi , Lee Organick , Callista Bee
Nature Communications 11 ( 1) 1 -9

28
2020
Random access in large-scale DNA data storage

Lee Organick , Siena Dumas Ang , Yuan-Jyue Chen , Randolph Lopez
Nature Biotechnology 36 ( 3) 242 -248

477
2018
A Content-Addressable DNA Database with Learned Sequence Encodings

Kendall Stewart , Yuan-Jyue Chen , David Ward , Xiaomeng Liu
international conference on dna computing 55 -70

12
2018
Scaling up DNA data storage and random access retrieval

Lee Organick , Siena Dumas Ang , Yuan-Jyue Chen , Randolph Lopez
bioRxiv 114553

25
2017
Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks.

Yuan-Jyue Chen , Sundipta D. Rao , Georg Seelig
Journal of Visualized Experiments ( 105)

4
2015
Content-Based Similarity Search in Large-Scale DNA Data Storage Systems

Callista Bee , Yuan-Jyue Chen , David Ward , Xiaomeng Liu
bioRxiv

13
2020
DNA assembly for nanopore data storage readout.

Randolph Lopez , Yuan-Jyue Chen , Siena Dumas Ang , Sergey Yekhanin
Nature Communications 10 ( 1) 2933

24
2019
Probing the physical limits of reliable DNA data retrieval.

Lee Organick , Yuan-Jyue Chen , Siena Dumas Ang , Randolph Lopez
Nature Communications 11 ( 1) 616 -616

20
2020
Programmable chemical controllers made from DNA

Yuan-Jyue Chen , Neil Dalchau , Niranjan Srinivas , Andrew Phillips
Nature Nanotechnology 8 ( 10) 755 -762

377
2013
DNA nanotechnology from the test tube to the cell.

Yuan-Jyue Chen , Benjamin Groves , Richard A. Muscat , Georg Seelig
Nature Nanotechnology 10 ( 9) 748 -760

493
2015
Computing in mammalian cells with nucleic acid strand exchange

Benjamin Groves , Yuan-Jyue Chen , Chiara Zurla , Sergii Pochekailov
Nature Nanotechnology 11 ( 3) 287 -294

180
2016
Using Strand Displacing Polymerase To Program Chemical Reaction Networks.

Shalin Shah , Jasmine Wee , Tianqi Song , Luis Ceze
Journal of the American Chemical Society 142 ( 21) 9587 -9593

3
2020
Experimental Assessment of PCR Specificity and Copy Number for Reliable Data Retrieval in DNA Storage

Lee Organick , Yuan-Jyue Chen , Siena Dumas Ang , Randolph Lopez
bioRxiv 565150

5
2019
Molecular-level similarity search brings computing to DNA data storage

Callista Bee , Yuan-Jyue Chen , Melissa Queen , David Ward
Nature communications 12 ( 1) 4764

17
2021
A deep learning model for predicting next-generation sequencing depth from DNA sequence

Jinny X Zhang , Boyan Yordanov , Alexander Gaunt , Michael X Wang
Nature communications 12 ( 1) 4387

28
2021
Robust digital molecular design of binarized neural networks

Johannes Linder , Yuan-Jyue Chen , David Wong , Georg Seelig
Smpte Journal

3
2021
A nanopore interface for higher bandwidth DNA computing

Karen Zhang , Yuan-Jyue Chen , Delaney Wilde , Kathryn Doroschak
Nature Communications 13 ( 1) 4904

1
2022
Synthetic DNA applications in information technology

Linda C Meiser , Bichlien H Nguyen , Yuan-Jyue Chen , Jeff Nivala
Nature communications 13 ( 1) 352

20
2022