Modeling Strategies Using Visual Programming in OpenAlea
Christophe Godin , Eric Moscardi , Daniel Barbeau , Jérôme Chopard
6th International Workshop on Functional-Structural Plant Models 101 -103
1
2010
Scientific workflow for reusing plant/FSPM models
Christophe Godin , Daniel Barbeau , Jérôme Chopard , Thomas Cokelaer
congress on modelling and simulation 968 -974
2011
OpenAlea: An open-source platform for the integration of heterogeneous FSPM components
Samuel Dufour-Kowalski , Christophe Pradal , Nicolas Dones , Pierre Barbier de Reuille
Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand
4
2007
Using mechanics in the modelling of meristem morphogenesis
Christophe Godin , Jan Traas , Jérôme Chopard , Szymon Stoma
5th International Workshop on Functional-Structural Plant Models
5
2007
Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data
Sarah Cohen-Boulakia , Jérôme Chopard , Christian Fournier , Michael Mielewczik
IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences)
2
2015
The role of mechanics in morphogenesis
Christophe Godin , Jérôme Chopard
6th International Workshop on Functional-Structural Plant Models 135 -137
1
2010
Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform
Llorenç Cabrera-Bosquet , Christophe Pradal , Jérôme Chopard , Tsu-Wei Chen
2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016)
2016
Towards a formal expression of morphogenesis: a mechanics based integration of cell growth at tissue scale
Christophe Godin , Jan Traas , Jérôme Chopard
Proceedings of the 7th International Workshop on Information Processing in Cells and Tissues 387 -399
4
2007
Interception de la pluie par des maquettes d'arbres en trois dimensions
Jérôme Chopard
ENSAM
2002
Flux-Based Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development
Szymon Stoma , Mikael Lucas , Jérôme Chopard , Marianne Schaedel
PLoS Computational Biology 4 ( 10) e1000207
147
2008
Fostering Collaborations towards Integrative Research Development
Niels Brouwers , Susan Moore , Thomas Lyons , Giles Hardy
Forests 4 ( 2) 329 -342
2
2013
A Data-Driven Integrative Model of Sepal Primordium Polarity in Arabidopsis
Camilo La Rota , Jérôme Chopard , Pradeep Das , Sandrine Paindavoine
The Plant Cell 23 ( 12) 4318 -4333
34
2011
InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid
Christophe Pradal , Simon Artzet , Jérôme Chopard , Dimitri Dupuis
Future Generation Computer Systems 67 341 -353
17
2017
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard
Future Generation Computer Systems 75 284 -298
74
2017
A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution
Frédéric Boudon , Jérôme Chopard , Olivier Ali , Benjamin Gilles
PLOS Computational Biology 11 ( 1) 1 -16
101
2015
Modelling foliage characteristics in 3D tree crowns: influence on light interception and leaf irradiance
Claude-Eric Parveaud , Jérôme Chopard , Jean Dauzat , Benoît Courbaud
Trees-structure and Function 22 ( 1) 87 -104
25
2008
3D modelling of water transfers in soil and roots systems
Jérôme Chopard
Proc. 4th Int. Workshop on Functional-Structural Plant Models 7 -11
5
2004
Drought stress physiology of sclerophyllous broad-leaved trees assessed with the non-invasive magnetic turgorpressure probe
M Bader , W Ehrenberger , R Bitter , J Stevens
Bader, M., Ehrenberger, W., Bitter, R., Stevens, J., Miller, B., Chopard, J., Rüger, S., Hardy, G. <https://researchrepository.murdoch.edu.au/view/author/Hardy, Giles.html>, Poot, P. and Dixon, K.W. (2012) Drought stress physiology of sclerophyllous broad-leaved trees assessed with the non-invasive magnetic turgor pressure probe. In: Ecological Society of Australia, Annual Conference, 3 - 7 December, Melbourne, Australia.
2012
Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots
D. Muraro , N. Mellor , M. P. Pound , H. Help
Proceedings of the National Academy of Sciences of the United States of America 111 ( 2) 857 -862
70
2014
A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana.
D. Muraro , A. Larrieu , M. Lucas , J. Chopard
Journal of Theoretical Biology 404 182 -205
10
2016