Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.

Ksenia Skvortsova , Elena Zotenko , Phuc-Loi Luu , Cathryn M Gould
Epigenetics & Chromatin 10 ( 1) 16 -16

45
2017
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

Aaron L. Statham , Mark D. Robinson , Jenny Z. Song , Marcel W. Coolen
Genome Research 22 ( 6) 1120 -1127

187
2012
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

Phillippa C. Taberlay , Joanna Achinger-Kawecka , Aaron T.L. Lun , Fabian A. Buske
Genome Research 26 ( 6) 719 -731

179
2016
Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes

Stephen T. Bradford , Shalima S. Nair , Aaron L. Statham , Susan J. van Dijk
Scientific Reports 9 ( 1) 9511

6
2019
44
1998
Advances in Prognostic Methylation Biomarkers for Prostate Cancer.

Dilys Lam , Susan Clark , Clare Stirzaker , Ruth Pidsley
Cancers 12 ( 10) 2993

3
2020
Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity

Marcel W. Coolen , Clare Stirzaker , Jenny Z. Song , Aaron L. Statham
Nature Cell Biology 12 ( 3) 235 -246

160
2010
Transcriptional Gene Silencing Promotes DNA Hypermethylation through a Sequential Change in Chromatin Modifications in Cancer Cells

Clare Stirzaker , Jenny Z. Song , Ben Davidson , Susan J. Clark
Cancer Research 64 ( 11) 3871 -3877

214
2004
Genome-wide DNA methylation profiling in triple-negative breast cancer reveals epigenetic signatures with important clinical value

Clare Stirzaker , Elena Zotenko , Susan J Clark
Molecular and Cellular Oncology 3 ( 1)

16
2016
Epigenetic therapies and biomarkers in breast cancer

Lauren Julia Brown , Joanna Achinger-Kawecka , Neil Portman , Susan Clark
Cancers 14 ( 3) 474

11
2022
Epigenetic therapy suppresses endocrine-resistant breast tumour growth by re-wiring ER-mediated 3D chromatin interactions

Joanna Achinger-Kawecka , Clare Stirzaker , Kee-Ming Chia , Neil Portman
bioRxiv 2021 -06

7
2021
Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality

Ruth Pidsley , Dilys Lam , Wenjia Qu , Timothy J Peters
Clinical and Translational Medicine 12 ( 10) e1030

3
2022
Memory of stochastic single-cell apoptotic signaling promotes chemoresistance in neuroblastoma

Jordan F Hastings , Sharissa L Latham , Alvin Kamili , Madeleine S Wheatley
Science Advances 9 ( 9) eabp8314

2023
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity

Qian Du , Grady C Smith , Phuc Loi Luu , James M Ferguson
Cell Reports 36 ( 12)

20
2021
Concordant epigenetic silencing of transforming growth factor-β signaling pathway genes occurs early in breast carcinogenesis

Rebecca A Hinshelwood , Lily I Huschtscha , John Melki , Clare Stirzaker
Cancer research 67 ( 24) 11517 -11527

109
2007
41 Canalization: what the flux?

Amandine Cornille , Tatiana Giraud , Marinus JM Smulders , Isabel Roldán-Ruiz

The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer

Joanna Achinger-Kawecka , Clare Stirzaker , Neil Portman , Elyssa Campbell
Nature Structural & Molecular Biology 1 -15

2
2024