Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

Ruth Pidsley , Elena Zotenko , Timothy J. Peters , Mitchell G. Lawrence
Genome Biology 17 ( 1) 208 -208

851
2016
BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach.

Andrea Riebler , Mirco Menigatti , Jenny Z Song , Aaron L Statham
Genome Biology 15 ( 2) 1 -20

24
2014
Loss of special AT-rich binding protein 1 expression is a marker of poor survival in lung cancer.

Christina I. Selinger , Wendy A. Cooper , Sam Al-Sohaily , Dessislava N. Mladenova
Journal of Thoracic Oncology 6 ( 7) 1179 -1189

91
2011
DNA methylation profile of triple negative breast cancer-specific genes comparing lymph node positive patients to lymph node negative patients.

Andrea Mathe , Michelle Wong-Brown , Warwick J. Locke , Clare Stirzaker
Scientific Reports 6 ( 1) 33435

25
2016
Methyl-CpG-binding domain proteins: readers of the epigenome.

Qian Du , Phuc-Loi Luu , Clare Stirzaker , Susan J Clark
Epigenomics 7 ( 6) 1051 -1073

376
2015
Enduring epigenetic landmarks define the cancer microenvironment.

Ruth Pidsley , Mitchell G. Lawrence , Elena Zotenko , Birunthi Niranjan
Genome Research 28 ( 5) 625 -638

48
2018
DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer

Andrew Stone , Elena Zotenko , Warwick J. Locke , Darren Korbie
Nature Communications 6 ( 1) 7758 -7758

65
2015
Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.

Matt Trau , John F. Forbes , Rodney J. Scott , Melissa A. Brown
Nature Communications 6 ( 1) 5899 -5899

106
2015
Epigenetic changes during tumour development – Functional epigenetics study

Clare Stirzaker , Ksenia Skvortsova , Etienne Masle-Farquhar , Christopher Goodnow
Pathology 52

2020
Ubiquitin chromatin remodelling after DNA damage is associated with the expression of key cancer genes and pathways

Alexander J. Cole , Kristie-Ann Dickson , Christopher Liddle , Clare Stirzaker
Cellular and Molecular Life Sciences 78 ( 3) 1011 -1027

2
2021
Identification and resolution of artifacts in bisulfite sequencing

Peter M Warnecke , Clare Stirzaker , Jenny Song , Christoph Grunau
Methods 27 ( 2) 101 -107

280
2002
DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns

Ksenia Skvortsova , Etienne Masle-Farquhar , Phuc-Loi Luu , Jenny Z Song
Cancer Cell 35 ( 2) 297 -314

61
2019
Epigenetic inactivation of a cluster of genes flanking MLH1 in microsatellite-unstable colorectal cancer

Megan P. Hitchins , Vita Ap Lin , Andrew Buckle , Kayfong Cheong
Cancer Research 67 ( 19) 9107 -9116

62
2007
Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer.

Lisa Horvath , James Kench , Kenneth Lee , Nicola J Armstrong
Nature Communications 8 ( 1) 1346

42
2017
Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning

Rebecca A. Hinshelwood , John R. Melki , Lily I. Huschtscha , Cheryl Paul
Human Molecular Genetics 18 ( 16) 3098 -3109

62
2009
The DNA methylation landscape in cancer.

Ksenia Skvortsova , Clare Stirzaker , Phillippa Taberlay
Essays in Biochemistry 63 ( 6) 797 -811

133
2019
Cancer Methylation Biomarkers in Circulating Cell-Free DNA

Ruth Pidsley , Clare Stirzaker
Springer, Singapore 217 -245

1
2019
Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer

Joanna Achinger-Kawecka , Fatima Valdes-Mora , Phuc-Loi Luu , Katherine A Giles
Nature Communications 11 ( 1) 320

84
2020
Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.

Amanda Khoury , Joanna Achinger-Kawecka , Saul A Bert , Grady C Smith
Nature Communications 11 ( 1) 54

65
2020
Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups

Katherine A Giles , Cathryn M Gould , Qian Du , Ksenia Skvortsova
Epigenetics & Chromatin 12 ( 1) 1 -19

12
2019