Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer

Darío G. Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M. Opitz, Renata Laxova, Fernando Santos-Simarro, Brigitte Gilbert-Dussardier, Lars Wittler, Marina Borschiwer, Stefan A. Haas, Marco Osterwalder, Martin Franke, Bernd Timmermann, Jochen Hecht, Malte Spielmann, Axel Visel, Stefan Mundlos, Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions Cell. ,vol. 161, pp. 1012- 1025 ,(2015) , 10.1016/J.CELL.2015.04.004

Aaron T.L. Lun, Gordon K. Smyth, diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data BMC Bioinformatics. ,vol. 16, pp. 258- 258 ,(2015) , 10.1186/S12859-015-0683-0

Jean-Philippe Fortin, Kasper D. Hansen, Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data Genome Biology. ,vol. 16, pp. 180- 180 ,(2015) , 10.1186/S13059-015-0741-Y

Andrew Stone, Elena Zotenko, Warwick J. Locke, Darren Korbie, Ewan K. A. Millar, Ruth Pidsley, Clare Stirzaker, Peter Graham, Matt Trau, Elizabeth A. Musgrove, Robert I. Nicholson, Julia M. W. Gee, Susan J. Clark, DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer Nature Communications. ,vol. 6, pp. 7758- 7758 ,(2015) , 10.1038/NCOMMS8758

Bing Ren, Adrian R. Krainer, Tom Maniatis, Qiang Wu, Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U. Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang, Yichao Lu, Yonghu Wu, Zhilian Jia, Wei Li, Michael Q. Zhang, CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function Cell. ,vol. 162, pp. 900- 910 ,(2015) , 10.1016/J.CELL.2015.07.038

Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021

Brenda Han, Melissa J Fullwood, Mei Hui Liu, You Fu Pan, Jun-Jun Liu, Xu Han, Yusoff Bin Mohamed, Yuriy L Orlov, Stoyan Velkov, Andrea Ho, Poh Huay Mei, Elaine GY Chew, Phillips Yao Hui Huang, Willem-Jan Welboren, Yuyuan Han, Hong Sain Ooi, Pramila N Ariyaratne, Vinsensius B Vega, Yanquan Luo, Peck Yean Tan, Pei Ye Choy, KD Wansa, Bing Zhao, Kar Sian Lim, Shi Chi Leow, Jit Sin Yow, Roy Joseph, Haixia Li, Kartiki V Desai, Jane S Thomsen, Yew Kok Lee, R Karuturi, Thoreau Herve, Guillaume Bourque, Hendrik G Stunnenberg, Xiaoan Ruan, Valere Cacheux-Rataboul, Wing-Kin Sung, Edison T Liu, Chia-Lin Wei, Edwin Cheung, Yijun Ruan, An oestrogen-receptor-α-bound human chromatin interactome Nature. ,vol. 462, pp. 58- 64 ,(2009) , 10.1038/NATURE08497

Antoni Hurtado, Kelly A Holmes, Timothy R Geistlinger, Iain R Hutcheson, Robert I Nicholson, Myles Brown, Jie Jiang, William J Howat, Simak Ali, Jason S Carroll, None, Regulation of ERBB2 by oestrogen receptor–PAX2 determines response to tamoxifen Nature. ,vol. 456, pp. 663- 666 ,(2008) , 10.1038/NATURE07483

Marcel W. Coolen, Clare Stirzaker, Jenny Z. Song, Aaron L. Statham, Zena Kassir, Carlos S. Moreno, Andrew N. Young, Vijay Varma, Terence P. Speed, Mark Cowley, Paul Lacaze, Warren Kaplan, Mark D. Robinson, Susan J. Clark, Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity Nature Cell Biology. ,vol. 12, pp. 235- 246 ,(2010) , 10.1038/NCB2023

Richard A. McClelland, Denise Barrow, Tracie-Ann Madden, Carol M. Dutkowski, Joanna Pamment, Janice M. Knowlden, Julia M. W. Gee, Robert I. Nicholson, Enhanced epidermal growth factor receptor signaling in MCF7 breast cancer cells after long-term culture in the presence of the pure antiestrogen ICI 182,780 (Faslodex). Endocrinology. ,vol. 142, pp. 2776- 2788 ,(2001) , 10.1210/ENDO.142.7.8259