Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing

Nan Wu , Piyush Ranjan , Changyu Tao , Chao Liu
Respiratory Research 22 1 -14

3
2021
Commensal Oral Microbiota, Disease Severity, and Mortality in Fibrotic Lung Disease

David N O’Dwyer , John S Kim , Shwu-Fan Ma , Piyush Ranjan
American Journal of Respiratory and Critical Care Medicine 209 ( 9) 1101 -1110

5
2024
The gut microbiome modulates body temperature both in sepsis and health

Kale S Bongers , Rishi Chanderraj , Robert J Woods , Roderick A McDonald
American Journal of Respiratory and Critical Care Medicine 207 ( 8) 1030 -1041

20
2023
SquiggleNet: real-time, direct classification of nanopore signals

Yuwei Bao , Jack Wadden , John R Erb-Downward , Piyush Ranjan
Genome Biology 22 ( 1) 1 -16

49
2021
Rapid real-time squiggle classification for read until using rawmap

Harisankar Sadasivan , Jack Wadden , Kush Goliya , Piyush Ranjan
Archives of clinical and biomedical research 7 ( 1) 45 -45

32
2023
Real-Time, Direct Classification of Nanopore Signals with SquiggleNet

Yuwei Bao , Jack Wadden , John R Erb-Downward , Piyush Ranjan
bioRxiv

1
2021
An International Study Of The Lung Microbiome In Chronic Obstructive Pulmonary Disease (COPD)

MeiLan K Han , John R Erb-Downward , Xin Wang , Susan Murray
American Thoracic Society A5112 -A5112

2
2015
A Comparison Of Three Methods Of Identification Of Bacteria In Bronchoalveolar Lavage Specimens

Robert P Dickson , John R Erb-Downward , Hallie C Prescott , Christine M Freeman
American Thoracic Society A6240 -A6240

2014
Analysis Of Spatial Variation In The Microbiota Of The Healthy Respiratory Tract By Illumina-Based Sequencing

Robert P Dickson , John R Erb-Downward , Christine M Freeman , James M Beck
American Thoracic Society A1728 -A1728

2014
Acute and chronic responses to toxic inhalations

Robert P Dickson , David A Schwartz
Fishman's pulmonary diseases and disorders 4 995 -1002

16
2008
Gut microbiota and protection from pneumococcal pneumonia

Robert P Dickson , Michael J Cox
Gut 66 ( 2) 384 -384

18
2017
A Prospective Cohort Protocol for the Remnant Investigation in Sepsis Study

Christopher W Seymour , Kelly Lynn Urbanek , Anna Nakayama , Jason N Kennedy
Critical Care Explorations 5 ( 11) e0974 -e0974

2023
Longitudinal respiratory subphenotypes in patients with COVID-19-related acute respiratory distress syndrome: results from three observational cohorts

Lieuwe DJ Bos , Michael Sjoding , Pratik Sinha , Sivasubramanium V Bhavani
The lancet Respiratory medicine 9 ( 12) 1377 -1386

89
2021
Critical Relevance of Stochastic Effects on Low-Bacterial-Biomass 16S rRNA Gene Analysis

John R Erb-Downward , Nicole R Falkowski , Jennifer C D’Souza , Lisa M McCloskey
mBio 11 ( 3)

26
2020
Immunocompromised host pneumonia: definitions and diagnostic criteria: an official American Thoracic Society Workshop Report

Guang-Shing Cheng , Kristina Crothers , Stefano Aliberti , Anne Bergeron
Annals of the American Thoracic Society 20 ( 3) 341 -353

11
2023
Bacterial topography of the healthy human lower respiratory tract. mBio 8: e02287-16

Robert P Dickson , John R Erb-Downward , Christine M Freeman , Lisa McCloskey

13
2017
Human Alveolar Macrophages Recognize Heat-Killed Pseudomonas Fluorescens By Upregulating The Innate Receptors TLR2 And Mertk And Producing IL-6

Jeanette P Brown , Brittan S Scales , Christine M Freeman , Robert P Dickson
American Thoracic Society A4292 -A4292

2015
Robust airway Microbiome signatures in acute respiratory failure and hospital-acquired pneumonia

Emmanuel Montassier , Georgios D Kitsios , Josiah E Radder , Quentin Le Bastard
Nature Medicine 29 ( 11) 2793 -2804

9
2023
Microbiome and Human Disease Pathogenesis

Christine C Johnson , Dennis R Ownby , Yvonne J Huang , John R Erb‑Downward