Steven Weaver
机构: Institute for Genomics and Evolutionary Medicine, Temple University
主页: stevenweaver.org
每年引用次数
引用次数
引用: 8,494
H-指数: 23
I10-指数 : 24
出版物: 33
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes.
Steven Weaver , Sergei L. Kosakovsky Pond , Stephen D. Shank , Sadie R. Wisotsky
PLOS ONE 16 ( 3)
2021
Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen.
Philippe Lemey , Maciej F. Boni , David L. Robertson , Sergei L. Kosakovsky Pond
PLOS Biology 19 ( 3)
141
2021
Detection of a SARS-CoV-2 variant of concern in South Africa.
Houriiyah Tegally , Eduan Wilkinson , Marta Giovanetti , Arash Iranzadeh
Nature 592 ( 7854) 438 -443
1,121
2021
An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic.
Sudhir Kumar , Qiqing Tao , Steven Weaver , Maxwell Sanderford
Molecular Biology and Evolution
1
2021
Gene-Wide Identification of Episodic Selection
Ben Murrell , Steven Weaver , Martin D. Smith , Joel O. Wertheim
Molecular Biology and Evolution 32 ( 5) 1365 -1371
221
2015
Less is More: an Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
Martin D. Smith , Joel O. Wertheim , Steven Weaver , Ben Murrell
Molecular Biology and Evolution 32 ( 5) 1342 -1353
501
2015
Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons
Kemal Eren , Steven Weaver , Robert Ketteringham , Morné Valentyn
PLOS Computational Biology 14 ( 12) e1006498
5
2018
Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples.
Melissa Laird Smith , Ben Murrell , Kemal Eren , Caroline Ignacio
Virus Evolution 2 ( 2)
21
2016
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics.
Dannon Baker , Marius Van Den Beek , Daniel Blankenberg , Dave Bouvier
PLOS Pathogens 16 ( 8)
10
2020
Contrast-FEL-A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches.
Sergei L Kosakovsky Pond , Sadie R Wisotsky , Ananias Escalante , Brittany Rife Magalis
Molecular Biology and Evolution 38 ( 3) 1184 -1198
6
2021
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Sergei L Kosakovsky Pond , Art F Y Poon , Ryan Velazquez , Steven Weaver
Molecular Biology and Evolution 37 ( 1) 295 -299
209
2020
Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.
Steven Weaver , Stephen D Shank , Stephanie J Spielman , Michael Li
Molecular Biology and Evolution 35 ( 3) 773 -777
512
2018
HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.
Sergei L Kosakovsky Pond , Steven Weaver , Andrew J Leigh Brown , Joel O Wertheim
Molecular Biology and Evolution 35 ( 7) 1812 -1819
110
2018
phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics.
Stephen D. Shank , Steven Weaver , Sergei L. Kosakovsky Pond
BMC Bioinformatics 19 ( 1) 276 -276
20
2018
IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform.
N. Lance Hepler , Konrad Scheffler , Steven Weaver , Ben Murrell
PLOS Computational Biology 10 ( 9) 1 -10
20
2014
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
Raquel Viana , Sikhulile Moyo , Daniel G Amoako , Houriiyah Tegally
Nature 603 ( 7902) 679 -686
857
2022
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
Will Fischer , Elena E Giorgi , Srirupa Chakraborty , Kien Nguyen
Cell host \& microbe 29 ( 7) 1093 -1110
50
2021
Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA. 1 that likely impact Spike function
Darren P Martin , Spyros Lytras , Alexander G Lucaci , Wolfgang Maier
Molecular biology and evolution 39 ( 4) msac061
30
2022
TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity
Marcos A Caraballo-Ortiz , Sayaka Miura , Maxwell Sanderford , Tenzin Dolker
Bioinformatics 38 ( 10) 2719 -2726
6
2022
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
Darren P Martin , Steven Weaver , Houriiyah Tegally , James Emmanuel San
Cell 184 ( 20) 5189 -5200. e7
252
2021