Principles of Systems Biology, No. 31

Hyunghoon Cho , Bonnie Berger , Jian Peng , Cyril Galitzine
Cell systems 7 ( 2) 133 -135

2018
Efficient Mining of the Most Significant Patterns with Permutation Testing

Leonardo Pellegrina , Fabio Vandin
knowledge discovery and data mining 2070 -2079

11
2018
Space-Efficient Parallel Algorithms for Combinatorial Search Problems

Andrea Pietracaprina , Geppino Pucci , Francesco Silvestri , Fabio Vandin
Mathematical Foundations of Computer Science 2013 717 -728

1
2013
Mining Sequential Patterns with VC-Dimension and Rademacher Complexity

Diego Santoro , Andrea Tonon , Fabio Vandin
Algorithms 13 ( 5) 123

4
2020
Identifying Drug Sensitivity Subnetworks with NETPHIX

Yoo-Ah Kim , Rebecca Sarto Basso , Damian Wojtowicz , Amanda Liu
Social Science Research Network

2020
Algorithms for detecting significantly mutated pathways in cancer

Fabio Vandin , Eli Upfal , Benjamin J. Raphael
research in computational molecular biology 6044 506 -521

16
2010
Comparison of microbiome samples: methods and computational challenges.

Matteo Comin , Barbara Di Camillo , Cinzia Pizzi , Fabio Vandin
Briefings in Bioinformatics 22 ( 1) 88 -95

3
2021
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes

Mark D M Leiserson , Fabio Vandin , Hsin-Ta Wu , Jason R Dobson
Nature Genetics 47 ( 2) 106 -114

830
2015
Accurate Computation of Survival Statistics in Genome-Wide Studies

Fabio Vandin , Alexandra Papoutsaki , Benjamin J. Raphael , Eli Upfal
PLOS Computational Biology 11 ( 5) e1004071

20
2015
MADMX: a strategy for maximal dense motif extraction.

Roberto Grossi , Andrea Pietracaprina , Nadia Pisanti , Geppino Pucci
Journal of Computational Biology 18 ( 4) 535 -545

12
2011
Algorithms for detecting significantly mutated pathways in cancer.

Fabio Vandin , Eli Upfal , Benjamin J. Raphael
Journal of Computational Biology 18 ( 3) 507 -522

308
2011
Ballast: a ball-based algorithm for structural motifs.

Lu He , Fabio Vandin , Gopal Pandurangan , Chris Bailey-Kellogg
Journal of Computational Biology 20 ( 2) 137 -151

4
2013
Fast Approximation of Frequent k -mers and Applications to Metagenomics

Leonardo Pellegrina , Cinzia Pizzi , Fabio Vandin
research in computational molecular biology 208 -226

1
2019
18th International Workshop on Algorithms in Bioinformatics (WABI 2018)

Hooman Zabeti , Tamon Stephen , Bonnie Berger , Leonid Chindelevitch
Schloss Dagstuhl-Leibniz-Zentrum für Informatik GmbH

2018
SDM14 Accepted Full Papers

Ning Yang , Xiangnan Kong , Active Multitask Learning Using Both Latent , Ayan Acharya

MADMX: A novel strategy for maximal dense motif extraction

Roberto Grossi , Andrea Pietracaprina , Nadia Pisanti , Geppino Pucci
Algorithms in Bioinformatics: 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings 9 362 -374

12
2009
Discovery of mutated subnetworks associated with clinical data in cancer

Fabio Vandin , Patrick Clay , Eli Upfal , Benjamin J Raphael
55 -66

128
2012
A rigorous statistical approach for identifying significant itemsets

Adam Kirsch , Michael Mitzenmacher , Andrea Pietracaprina , Geppino Pucci
Proc. of IEEE ICDM 8

3
2008
Supporting Text for “Accurate Computation of Survival Statistics in Genome-wide Studies”

Fabio Vandin , Alexandra Papoutsaki , Benjamin J Raphael , Eli Upfal