Efficient detection of differentially methylated regions using DiMmeR

Diogo Almeida , Ida Skov , Artur Silva , Fabio Vandin
Bioinformatics 33 ( 4) 549 -551

7
2017
DiMmeR: Discovery of Multiple Differentially Methylated Regions

Diogo Marinho Almeida , Ida Skov , Artur Silva , Fabio Vandin

2016
Computational pan-genomics: status, promises and challenges

Tobias Marschall , Manja Marz , Thomas Abeel , Louis Dijkstra
Briefings in Bioinformatics 19 ( 1) 118–135 -118–135

330
2018
Sizeshiftreg: a regularization method for improving size-generalization in graph neural networks

Davide Buffelli , Pietro Liò , Fabio Vandin
Advances in Neural Information Processing Systems 35 31871 -31885

41
2022
The second decade of the international conference on research in computational molecular biology (RECOMB)

Farhad Hormozdiari , Fereydoun Hormozdiari , Carl Kingsford , Paul Medvedev
Research in Computational Molecular Biology: 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings 20 3 -16

2016
Comet: A statistical approach to identify combinations of mutually exclusive alterations in cancer

Hsin-Ta Wu , Mark DM Leiserson , Fabio Vandin , Benjamin J Raphael
Cancer Research 75 ( 15_Supplement) 1936 -1936

4
2015
Heat diffusion based genetic network analysis

Benjamin J Raphael , Mark MD LEISERSON , Fabio Vandin , Hsin-Ta Wu

2017
Research in Computational Molecular Biology-19th Annual International Conference, RECOMB 2015, Proceedings

Mark DM Leiserson , Wu Hsin Ta , Fabio Vandin , Benjamin J Raphael
LECTURE NOTES IN COMPUTER SCIENCE 9029 202 -204

2015
Pan-cancer identification of mutated pathways and protein complexes

Mark D Leiserson , Fabio Vandin , Hsin-Ta Wu , Jason R Dobson
Cancer Research 74 ( 19 Supplement) 5324 -5324

21
2014
Finding the True Frequent Itemsets

Matteo Riondato , Fabio Vandin
arXiv preprint arXiv:1301.1218

22
2013
MCRapper: Monte-Carlo Rademacher averages for poset families and approximate pattern mining

Leonardo Pellegrina , Cyrus Cousins , Fabio Vandin , Matteo Riondato
ACM Transactions on Knowledge Discovery from Data (TKDD) 16 ( 6) 1 -29

20
2022
SPRISS: approximating frequent k-mers by sampling reads, and applications

Diego Santoro , Leonardo Pellegrina , Matteo Comin , Fabio Vandin
Bioinformatics 38 ( 13) 3343 -3350

4
2022
An efficient branch and cut algorithm to find frequently mutated subnetworks in cancer

Anna Bomersbach , Marco Chiarandini , Fabio Vandin
Algorithms in Bioinformatics: 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings 16 27 -39

12
2016
Scalable distributed approximation of internal measures for clustering evaluation

Federico Altieri , Andrea Pietracaprina , Geppino Pucci , Fabio Vandin
Society for Industrial and Applied Mathematics 648 -656

3
2021
Discovering significant evolutionary trajectories in cancer phylogenies

Leonardo Pellegrina , Fabio Vandin
Bioinformatics 38 ( Supplement_2) ii49 -ii55

9
2022
Graph representation learning for multi-task settings: a meta-learning approach

Davide Buffelli , Fabio Vandin
2022 International Joint Conference on Neural Networks (IJCNN) 1 -8

8
2022