Metabolic network analysis integrated with transcript verification for sequenced genomes

Ani Manichaikul , Lila Ghamsari , Erik F Y Hom , Chenwei Lin
Nature Methods 6 ( 8) 589 -592

78
2009
Antibacterial mechanisms identified through structural systems pharmacology

Roger L Chang , Lei Xie , Philip E Bourne , Bernhard O Palsson
BMC Systems Biology 7 ( 1) 102 -102

20
2013
Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism

Roger L Chang , Lila Ghamsari , Ani Manichaikul , Erik F Y Hom
Molecular Systems Biology 7 ( 1) 518 -518

335
2011
Genome‐scale models of metabolism and gene expression extend and refine growth phenotype prediction

Edward J O'Brien , Joshua A Lerman , Roger L Chang , Daniel R Hyduke
Molecular Systems Biology 9 ( 1) 693 -693

317
2013
Protein structure, amino acid composition and sequence determine proteome vulnerability to oxidation-induced damage.

Roger L Chang , Julian A Stanley , Matthew C Robinson , Joel W Sher
The EMBO Journal 39 ( 23)

2
2020
Natural and designed proteins inspired by extremotolerant organisms can form condensates and attenuate apoptosis in human cells

Mike T Veling , Dan T Nguyen , Nicole N Thadani , Michela E Oster
ACS synthetic biology 11 ( 3) 1292 -1302

5
2022
Multi-omics Analysis of Dsup Expressing Human Cells Reveals Open Chromatin Architectural Dynamics Underyling Radioprotection

Craig Westover , Deena Najjar , Cem Meydan , Kirill Grigorev
bioRxiv 2020.11. 10.373571 -2020.11. 10.373571

5
2020
Do Genome-scale Models Need Exact Solvers or Clearer Standards?

Ali Ebrahim , Eivind Almaas , Eugen Bauer , Aarash Bordbar
Molecular Systems Biology 11 ( 10) 831 -831

64
2015
Streptomyces thermoautotrophicus does not fix nitrogen

Drew MacKellar , Lucas Lieber , Jeffrey S Norman , Anthony Bolger

Structural Systems Biology Evaluation of Metabolic Thermotolerance

Roger L Chang , Kathleen Andrews , Donghyuk Kim , Zhanwen Li

Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow.

Elizabeth Brunk , Roger L. Chang , Jing Xia , Hooman Hefzi
Proceedings of the National Academy of Sciences of the United States of America 115 ( 43) 11096 -11101

24
2018
Drug off-target effects predicted using structural analysis in the context of a metabolic network model.

Roger L. Chang , Li Xie , Lei Xie , Philip E. Bourne
PLOS Computational Biology 6 ( 9)

233
2010
Systemic post-translational control of bacterial metabolism regulates adaptation in dynamic environments

Elizabeth Brunk , Roger L. Chang , Jing Xia , Hooman Hefzi
bioRxiv 180646

3
2017
Streptomyces thermoautotrophicus does not fix nitrogen

Drew MacKellar , Lucas Lieber , Jeffrey S. Norman , Anthony Bolger
Scientific Reports 6 ( 1) 20086 -20086

30
2016
Systems biology of the structural proteome

Elizabeth Brunk , Nathan Mih , Jonathan Monk , Zhen Zhang
BMC Systems Biology 10 ( 1) 26 -26

53
2016
Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks

Roger L. Chang , Feng Luo , Stuart Johnson , Richard H. Scheuermann
International Journal of Bioinformatics Research and Applications 6 ( 2) 101 -119

3
2010
Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coli

Roger L. Chang , Kathleen Andrews , Donghyuk Kim , Zhanwen Li
Science 340 ( 6137) 1220 -1223

96
2013
Systems level analysis of the Chlamydomonas reinhardtii metabolic network reveals variability in evolutionary co-conservation

Amphun Chaiboonchoe , Lila Ghamsari , Bushra Dohai , Patrick Ng
Molecular BioSystems 12 ( 8) 2394 -2407

6
2016