Attentive cross-modal paratope prediction

Pietro Sormanni , Petar Veličković , Andreea Deac
arXiv: Machine Learning

40
2018
Quantifying misfolded protein oligomers as drug targets and biomarkers in Alzheimer and Parkinson diseases

Johnny Habchi , Pietro Sormanni , Michele Vendruscolo , Klara Kulenkampff
Nature Reviews Chemistry 5 ( 4) 277 -294

2021
Rationally Designed Bicyclic Peptides Prevent the Conversion of Aβ42 Assemblies Into Fibrillar Structures.

Pietro Sormanni , Michele Vendruscolo , Tatsuya Ikenoue , Francesco A. Aprile
Frontiers in Neuroscience 15 623097 -623097

2021
Comparative Studies in the A30P and A53T α-Synuclein C. elegans Strains to Investigate the Molecular Origins of Parkinson's Disease.

Michele Perni , Annemieke Van der Goot , Ryan Limbocker , Tjakko J Van Ham
Frontiers in Cell and Developmental Biology 9 552549 -552549

2021
Massively parallel C. elegans tracking provides multi-dimensional fingerprints for phenotypic discovery

Michele Perni , Pavan K Challa , Julius B Kirkegaard , Ryan Limbocker
Journal of Neuroscience Methods 306 57 -67

48
2018
Rational design of antibodies targeting specific epitopes within intrinsically disordered proteins

Pietro Sormanni , Francesco A. Aprile , Michele Vendruscolo
Proceedings of the National Academy of Sciences of the United States of America 112 ( 32) 9902 -9907

114
2015
A rationally designed bicyclic peptide remodels Aβ42 aggregation in vitro and reduces its toxicity in a worm model of Alzheimer's disease.

Tatsuya Ikenoue , Francesco A. Aprile , Pietro Sormanni , Francesco S. Ruggeri
Scientific Reports 10 ( 1) 15280 -15280

3
2020
A Rationally Designed Hsp70 Variant Rescues the Aggregation-Associated Toxicity of Human IAPP in Cultured Pancreatic Islet β-Cells.

Marie Bongiovanni , Francesco Aprile , Pietro Sormanni , Michele Vendruscolo
International Journal of Molecular Sciences 19 ( 5) 1443

9
2018
Supersaturated proteins are enriched at synapses and underlie cell and tissue vulnerability in Alzheimer's disease.

Rosie Freer , Pietro Sormanni , Prajwal Ciryam , Burkhard Rammner
Heliyon 5 ( 11)

7
2019
Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.

Tanguy Le Marchand , Matteo de Rosa , Nicola Salvi , Benedetta Maria Sala
Nature Communications 9 ( 1) 1658 -1658

29
2018
2
2020
Identifying A- and P-site locations on ribosome-protected mRNA fragments using Integer Programming.

Nabeel Ahmed , Pietro Sormanni , Prajwal Ciryam , Michele Vendruscolo
Scientific Reports 9 ( 1) 6256 -6256

8
2019
In vitro and in silico assessment of the developability of a designed monoclonal antibody library.

Adriana-Michelle Wolf Pérez , Pietro Sormanni , Jonathan Sonne Andersen , Laila Ismail Sakhnini
mAbs 11 ( 2) 388 -400

20
2019
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Ajeet K. Sharma , Pietro Sormanni , Nabeel Ahmed , Prajwal Ciryam
PLOS Computational Biology 15 ( 5) e1007070

24
2019
Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability.

Carlo Camilloni , Benedetta Maria Sala , Pietro Sormanni , Riccardo Porcari
Scientific Reports 6 ( 1) 25559 -25559

57
2016
Fibrillogenic propensity of the GroEL apical domain: A Janus-faced minichaperone

Jin Chen , Hisashi Yagi , Pietro Sormanni , Michele Vendruscolo
FEBS Letters 586 ( 8) 1120 -1127

14
2012
Proteome-wide observation of the phenomenon of life on the edge of solubility

Giulia Vecchi , Pietro Sormanni , Benedetta Mannini , Andrea Vandelli
Proceedings of the National Academy of Sciences of the United States of America 117 ( 2) 1015 -1020

81
2020
Rational design of a conformation-specific antibody for the quantification of Aβ oligomers.

Francesco A. Aprile , Pietro Sormanni , Marina Podpolny , Shianne Chhangur
Proceedings of the National Academy of Sciences of the United States of America 117 ( 24) 13509 -13518

43
2020
A Rational Design Strategy for the Selective Activity Enhancement of a Molecular Chaperone toward a Target Substrate.

Francesco A. Aprile , Pietro Sormanni , Michele Vendruscolo
Biochemistry 54 ( 32) 5103 -5112

27
2015
Rationally Designed Antibodies as Research Tools to Study the Structure-Toxicity Relationship of Amyloid-β Oligomers.

Ryan Limbocker , Benedetta Mannini , Rodrigo Cataldi , Shianne Chhangur
International Journal of Molecular Sciences 21 ( 12) 4542

4
2020