Beyond expression profiling: next generation uses of high density oligonucleotide arrays.

Philipp Kapranov , Victor I Sementchenko , Thomas R Gingeras
Briefings in Functional Genomics and Proteomics 2 ( 1) 47 -56

37
2003
Methods and compositions for profiling transcriptionally active sites of the genome

Victor Sementchenko , Antonio Piccolboni , Philipp Kapranov , Thomas Gingeras

2
2004
Methods for analyzing transcripts

Thomas Gingeras , Philipp Kapranov

2006
Methods for analyzing transcripts

Thomas Gingeras , Philipp Kapranov

2005
Evidence of coordinated regulation of coding and novel transcription in the chromosomes 21 and 22 in the embryonic cancer cell line NCCIT

Victor I Sementchenko , Stefan Bekiranov , Simon E Cawley , Huck H Ng
Cancer Research 64 ( 7_Supplement) 218 -218

2004
Profiling of short RNAs using Helicos single-molecule sequencing

Philipp Kapranov , Fatih Ozsolak , Patrice M Milos
Next-Generation MicroRNA Expression Profiling Technology: Methods and Protocols 219 -232

23
2012
Complex age-and cancer-related changes in human blood transcriptome—implications for pan-cancer diagnostics

Fei Qi , Fan Gao , Ye Cai , Xueer Han
Frontiers in Genetics 12 746879 -746879

10
2021
Hotspots of single-strand DNA “breakome” are enriched at transcriptional start sites of genes

Huifen Cao , Yufei Zhang , Ye Cai , Lu Tang
Frontiers in Molecular Biosciences 9 895795 -895795

8
2022
FLI1 promotes protein translation via the transcriptional regulation of MKNK1 expression

Chunlin Wang , Jialei Song , Wuling Liu , Yao Yao
International Journal of Oncology 56 ( 2) 430 -438

8
2020
Methods to analyze the non-coding RNA interactome—recent advances and challenges

Huifen Cao , Philipp Kapranov
Frontiers in Genetics 13 857759 -857759

6
2022
Lessons from discovery of true ADAR RNA editing sites in a human cell line

Fang Wang , Huifen Cao , Qiu Xia , Ziheng Liu
BMC biology 21 ( 1) 160 -160

4
2023
A large non-coding RNA that is characteristic of Ewing sarcoma family of tumors

Sheetal V Bajaj , Daniel H Wai , Jonathan D Buckley , Philipp Kapranov
Cancer Research 71 ( 8_Supplement) 1182 -1182

4
2011
Large intergenic noncoding RNAs associated with Ewing sarcoma family of tumors

Daniel H Wai , Dai-Ying Wu , Michele R Wing , Robert J Arceci
Cancer Research 70 ( 8_Supplement) 4087 -4087

3
2010
Complexities of mammalian transcriptome revealed by targeted RNA enrichment techniques

Dongyang Xu , Lu Tang , Philipp Kapranov
Trends in Genetics 39 ( 4) 320 -333

2
2023
Evidence for Existence of Multiple Functional Human Small RNAs Derived from Transcripts of Protein-Coding Genes

Fan Gao , Fang Wang , Huifen Cao , Yue Chen
International Journal of Molecular Sciences 24 ( 4) 4163 -4163

2
2023
Methods, flow cells and systems for single cell analysis

Richard Joseph , James DiMeo , Mirna Jarosz , John F Thompson

2
2012
Mitochondrial mutation spectrum in Chordates: damage versus replication signatures, causes, and dynamics

Dmitrii Iliushchenko , Bogdan Efimenko , Alina G Mikhailova , Victor Shamanskiy
bioRxiv 2023.12. 08.570826 -2023.12. 08.570826

1
2023
Genome-Wide Profiling of Endogenous Single-Stranded DNA Using the SSiNGLe-P1 Method

Dongyang Xu , Yu Huang , Lingcong Luo , Lu Tang
International Journal of Molecular Sciences 24 ( 15) 12062 -12062

1
2023
Recent Progresses of Non-coding RNAs in Biological and Medical Research

Yun Zheng , Philipp Kapranov
Frontiers in Genetics 11 510881 -510881

1
2020