Error tolerant indexing and alignment of short reads with covering template families.

Eldar Giladi , John Healy , Gene Myers , Chris Hart
Journal of Computational Biology 17 ( 10) 1397 -1411

21
2010
Erratum: A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus

Sandra Lazorthes , Céline Vallot , Sébastien Briois , Marion Aguirrebengoa
Nature Communications 6 6918

2015
Long non-coding RNAs: definitions, functions, challenges and recommendations

John S Mattick , Paulo P Amaral , Piero Carninci , Susan Carpenter
Nature Reviews Molecular Cell Biology 24 ( 6) 430 -447

3
2023
Chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network

Zhonghua Du , Xue Wen , Yichen Wang , Lin Jia
Genome Biology 22 ( 1) 1 -29

10
2021
Transcriptomics for clinical and experimental biology research: Hang on a Seq

Tanner Stokes , Haoning Howard Cen , Philipp Kapranov , Iain J Gallagher
Advanced Genetics 2200024

2023
Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method

Ye Cai , Huifen Cao , Fang Wang , Yufei Zhang
Nature Communications 13 ( 1) 5868

1
2022
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 Feingold Elise A. 51 Guyer Mark S. 51 Collins Francis S. 52 , Baylor College of Medicine Human Genome Sequencing Center* , Washington University Genome Sequencing Center* , Broad Institute*
Nature 447 ( 7146) 799 -816

5,695
2007
Long Distance and Global Transcription Networks Characterize ENCODE Regions

Roderic Guigó , France Denoeud , Alexandre Reymond , Philipp Kapranov

Systematic evaluation of variability in ChIP-chip experiments using

Jason D Lieb , X Shirley Liu , Heather Hirsch Moqtaderi , Hennady P Shulha

2008
Acknowledgement to Reviewers of Non-Coding RNA in 2018

Nicola Amodio , Federico Ariel , Maninjay Atianand , Duc-Hiep Bach

2019
Structured RNAs in the ENCODE selected regions of the human

Roderic Guigó , Michael Snyder , Mark B Gerstein , Alexandre Reymond

2007
A myelopoiesis-associated regulatory intergenic non-coding RNA

Thomas R Gingeras , Philipp Kapranov , Sherman M Weissman , Peter E Newburger

A non-coding RNA panel is prognostically superior to standard pathologic criteria and coding transcripts in rhabdomyosarcoma

Anirban P Mitra , Jonathan D Buckley , Sheetal A Mitra , Elai Davicioni
Cancer Research 72 ( 8_Supplement) 5581 -5581

2012
Novel class of human RNAs associated with gene termini suggests an uncharacterized RNA copying mechanism

Philipp Kapranov , Fatih Ozsolak , Sang Woo Kim , Sylvain Foissac
Nature 466 ( 7306) 642 -642

1
2010
Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution

Jill Cheng , Philipp Kapranov , Jorg Drenkow , Sujit Dike
Science 308 ( 5725) 1149 -1154

1,051
2005
Large-scale transcriptional activity in chromosomes 21 and 22.

Philipp Kapranov , Simon E Cawley , Jorg Drenkow , Stefan Bekiranov
Science 296 ( 5569) 916 -919

749
2002
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.

Dione Kampa , Jill Cheng , Philipp Kapranov , Mark Yamanaka
Genome Research 14 ( 3) 331 -342

482
2004
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

Philipp Kapranov , Jorg Drenkow , Jill Cheng , Jeffrey Long
Genome Research 15 ( 7) 987 -997

456
2005
Microarray-based DNA methylation profiling: technology and applications

Axel Schumacher , Philipp Kapranov , Zachary Kaminsky , James Flanagan
Nucleic Acids Research 34 ( 2) 528 -542

250
2006