PCR-enzyme-linked immunosorbent assay and partial rRNA gene sequencing: a rational approach to identifying mycobacteria.

作者: S Patel , M Yates , N A Saunders

DOI: 10.1128/JCM.35.9.2375-2380.1997

关键词: Hybridization probeAmpliconMycobacterium terraePrimer (molecular biology)BiologyNucleic acid thermodynamicsMicrotiter platePolymerase chain reactionMicrobiologyMolecular biologyMycobacteriumMicrobiology (medical)

摘要: A PCR-enzyme-linked immunosorbent assay (ELISA) for amplification and rapid identification of mycobacterial DNA coding 16S rRNA was developed. The PCR selectively targeted amplified part the gene from all mycobacteria while simultaneously labelling one strand product with a 5' fluorescein-labelled primer. identity labelled subsequently determined by hybridization to panel species-specific capture probes, which were immobilized via their biotin ends streptavidin-coated microtiter plate. Specific species probe detected colorimetrically an anti-fluorescein enzyme conjugate. able identify 10 Mycobacterium spp. hybridize (All1) also included. By heminested PCR, sensitive enough detect as little fg DNA, is equivalent approximately three bacilli. directly sputa. specificities probes assessed analysis 60 strains corresponding 18 species. Probes Avi1, Int1, Kan1, Xen1, Che1, For1, Mal1, Ter1, Gor1 specific. Tbc1 cross-hybridized terrae amplicon. Analysis 35 tested blind resulted in 34 being correctly identified. This method could be used early cultures may suitable detection concurrent within clinical specimens.

参考文章(33)
S Patel, S Wall, N A Saunders, Heminested inverse PCR for IS6110 fingerprinting of Mycobacterium tuberculosis strains. Journal of Clinical Microbiology. ,vol. 34, pp. 1686- 1690 ,(1996) , 10.1128/JCM.34.7.1686-1690.1996
B B Plikaytis, B D Plikaytis, M A Yakrus, W R Butler, C L Woodley, V A Silcox, T M Shinnick, Differentiation of slowly growing Mycobacterium species, including Mycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis. Journal of Clinical Microbiology. ,vol. 30, pp. 1815- 1822 ,(1992) , 10.1128/JCM.30.7.1815-1822.1992
P Kirschner, E C Böttger, Microheterogeneity within rRNA of Mycobacterium gordonae. Journal of Clinical Microbiology. ,vol. 30, pp. 1049- 1050 ,(1992) , 10.1128/JCM.30.4.1049-1050.1992
B Böddinghaus, T Rogall, T Flohr, H Blöcker, E C Böttger, Detection and identification of mycobacteria by amplification of rRNA. Journal of Clinical Microbiology. ,vol. 28, pp. 1751- 1759 ,(1990) , 10.1128/JCM.28.8.1751-1759.1990
A Telenti, F Marchesi, M Balz, F Bally, E C Böttger, T Bodmer, Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. Journal of Clinical Microbiology. ,vol. 31, pp. 175- 178 ,(1993) , 10.1128/JCM.31.2.175-178.1993
P Kirschner, J Rosenau, B Springer, K Teschner, K Feldmann, E C Böttger, Diagnosis of mycobacterial infections by nucleic acid amplification: 18-month prospective study. Journal of Clinical Microbiology. ,vol. 34, pp. 304- 312 ,(1996) , 10.1128/JCM.34.2.304-312.1996
M Vaneechoutte, H De Beenhouwer, G Claeys, G Verschraegen, A De Rouck, N Paepe, A Elaichouni, F Portaels, Identification of Mycobacterium species by using amplified ribosomal DNA restriction analysis. Journal of Clinical Microbiology. ,vol. 31, pp. 2061- 2065 ,(1993) , 10.1128/JCM.31.8.2061-2065.1993
E G Ford, S J Snead, J Todd, N G Warren, Strains of Mycobacterium terrae complex which react with DNA probes for M. tuberculosis complex. Journal of Clinical Microbiology. ,vol. 31, pp. 2805- 2806 ,(1993) , 10.1128/JCM.31.10.2805-2806.1993
H De Beenhouwer, Z Liang, P De Rijk, C Van Eekeren, F Portaels, Detection and identification of mycobacteria by DNA amplification and oligonucleotide-specific capture plate hybridization. Journal of Clinical Microbiology. ,vol. 33, pp. 2994- 2998 ,(1995) , 10.1128/JCM.33.11.2994-2998.1995
P Kirschner, B Springer, U Vogel, A Meier, A Wrede, M Kiekenbeck, F C Bange, E C Böttger, Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory. Journal of Clinical Microbiology. ,vol. 31, pp. 2882- 2889 ,(1993) , 10.1128/JCM.31.11.2882-2889.1993