The SNP Consortium website: past, present and future

作者: Gudmundur A Thorisson , Lincoln D Stein

DOI: 10.1093/NAR/GKG052

关键词: Web pageAllele frequencyThe SNP ConsortiumBiologyInternational HapMap ProjectSequence assemblySingle-nucleotide polymorphismGeneticsSNPGenomeWorld Wide Web

摘要: The SNP Consortium website (http://snp.cshl.org) has undergone many changes since its initial conception three years ago. database back end been changed from the venerable ACeDB to more scalable MySQL engine. Users can access data via gene or single nucleotide polymorphism (SNP) keyword searches and browse dump textfiles. A graphical genome browsing interface shows SNPs mapped onto assembly in context of externally available predictions other features. allele frequency genotype are FTP-download on individual report web pages. linkage maps for download a comparative map viewer. All software components coordinating center (DCC) open source.

参考文章(15)
Ellen F. Vieux, Pui-Yan Kwok, Raymond D. Miller, Primer design for PCR and sequencing in high-throughput analysis of SNPs. BioTechniques. ,vol. 32, pp. 28- 32 ,(2002) , 10.2144/JUN0202
E. Wijsman, L. Kruglyak, R. Sachidanandam, H. M. Cann, E. S. Winn-Deen, J. Winick, T. C. Matise, M. Ehm, I. McMullen, L. Stein, P. Cohen, A. Clark, C. He, J. Heil, S. Glanowski, H. L. Holden, C. de Toma, B. Chui, E. Lai, M. Wagner, A high-resolution human SNP linkage map ,(2002)
Tara C. Matise, Ravi Sachidanandam, Andrew G. Clark, Leonid Kruglyak, Ellen Wijsman, Jerzy Kakol, Steven Buyske, Buena Chui, Patrick Cohen, Claudia de Toma, Margaret Ehm, Stephen Glanowski, Chunsheng He, Jeremy Heil, Kyriacos Markianos, Ivy McMullen, Margaret A. Pericak-Vance, Arkadiy Silbergleit, Lincoln Stein, Michael Wagner, Alexander F. Wilson, Jeffrey D. Winick, Emily S. Winn-Deen, Carl T. Yamashiro, Howard M. Cann, Eric Lai, Arthur L. Holden, A 3.9-Centimorgan-Resolution Human Single-Nucleotide Polymorphism Linkage Map and Screening Set American Journal of Human Genetics. ,vol. 73, pp. 271- 284 ,(2003) , 10.1086/377137
Stephen T Sherry, M-H Ward, M Kholodov, J Baker, Lon Phan, Elizabeth M Smigielski, Karl Sirotkin, dbSNP: the NCBI database of genetic variation Nucleic Acids Research. ,vol. 29, pp. 308- 311 ,(2001) , 10.1093/NAR/29.1.308
W. J. Kent, C. W. Sugnet, T. S. Furey, K. M. Roskin, T. H. Pringle, A. M. Zahler, a. D. Haussler, The Human Genome Browser at UCSC Genome Research. ,vol. 12, pp. 996- 1006 ,(2002) , 10.1101/GR.229102
Tim Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, L Clark, Tony Cox, J Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, J Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, H Lehvaslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, M Pocock, S Potter, A Rust, Esther Schmidt, S Searle, Guy Slater, J Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, M Clamp, The Ensembl genome database project Nucleic Acids Research. ,vol. 30, pp. 38- 41 ,(2002) , 10.1093/NAR/30.1.38
Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Chang, Kenneth Clark, Leonid Teytelman, Steve Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, Lincoln Stein, Gramene: a resource for comparative grass genomics Nucleic Acids Research. ,vol. 30, pp. 103- 105 ,(2002) , 10.1093/NAR/30.1.103
W James Kent, David Haussler, Assembly of the Working Draft of the Human Genome with GigAssembler Genome Research. ,vol. 11, pp. 1541- 1548 ,(2001) , 10.1101/GR.183201
Lincoln D Stein, Christopher Mungall, ShengQiang Shu, Michael Caudy, Marco Mangone, Allen Day, Elizabeth Nickerson, Jason E Stajich, Todd W Harris, Adrian Arva, Suzanna Lewis, The Generic Genome Browser: A Building Block for a Model Organism System Database Genome Research. ,vol. 12, pp. 1599- 1610 ,(2002) , 10.1101/GR.403602