Systems biology approaches to the study of cardiovascular drugs.

作者: Yuri Nikolsky , Robert Kleemann

DOI: 10.1007/978-1-60761-800-3_11

关键词: PharmacologyBioinformaticsDrugBiologyTreatment strategyPathway analysisSystems biologyAdverse effect

摘要: Atherogenic lipids and chronic inflammation drive the development of cardiovascular disorders such as atherosclerosis. Many drugs target liver which is involved in formation lipid inflammatory risk factors. With robust systems biology tools comprehensive bioinformatical packages becoming available affordable, effect novel treatment strategies can be analyzed more comprehensively with higher sensitivity. For example, beneficial well adverse effects already detected on gene metabolite level, prior to their macroscopic manifestation. This chapter describes a approach for prototype CV drug established effects. All relevant steps, experimental design, tissue collection high quality RNA preparation, analysis functional processes, pathways (targeted untargeted) are addressed. © 2010 Springer Science+Business Media, LLC.

参考文章(19)
Yuri Nikolsky, Eugene Kirillov, Roman Zuev, Eugene Rakhmatulin, Tatiana Nikolskaya, Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform Methods in Molecular Biology. ,vol. 563, pp. 177- 196 ,(2009) , 10.1007/978-1-60761-175-2_10
Andreas Schroeder, Odilo Mueller, Susanne Stocker, Ruediger Salowsky, Michael Leiber, Marcus Gassmann, Samar Lightfoot, Wolfram Menzel, Martin Granzow, Thomas Ragg, The RIN: an RNA integrity number for assigning integrity values to RNA measurements BMC Molecular Biology. ,vol. 7, pp. 3- 3 ,(2006) , 10.1186/1471-2199-7-3
Jane Armitage, The safety of statins in clinical practice The Lancet. ,vol. 370, pp. 1781- 1790 ,(2007) , 10.1016/S0140-6736(07)60716-8
A RUBENSTRUNK, R HANF, D HUM, J FRUCHART, B STAELS, Safety issues and prospects for future generations of PPAR modulators Biochimica et Biophysica Acta. ,vol. 1771, pp. 1065- 1081 ,(2007) , 10.1016/J.BBALIP.2007.02.003
R. Kleemann, S. Zadelaar, T. Kooistra, Cytokines and atherosclerosis: a comprehensive review of studies in mice Cardiovascular Research. ,vol. 79, pp. 360- 376 ,(2008) , 10.1093/CVR/CVN120
Lars Verschuren, Teake Kooistra, Jürgen Bernhagen, Peter J. Voshol, D. Margriet Ouwens, Marjan van Erk, Jitske de Vries-van der Weij, Lin Leng, J. Hajo van Bockel, Ko Willems van Dijk, Günter Fingerle-Rowson, Rick Bucala, Robert Kleemann, MIF Deficiency Reduces Chronic Inflammation in White Adipose Tissue and Impairs the Development of Insulin Resistance, Glucose Intolerance, and Associated Atherosclerotic Disease Circulation Research. ,vol. 105, pp. 99- 107 ,(2009) , 10.1161/CIRCRESAHA.109.199166
R. Kleemann, T. Kooistra, HMG-CoA Reductase Inhibitors: Effects on Chronic Subacute Inflammation and Onset of Atherosclerosis Induced by Dietary Cholesterol Current Drug Targets - Cardiovascular & Hematological Disorders. ,vol. 5, pp. 441- 453 ,(2005) , 10.2174/156800605774962077
Laurent Vergnes, Jack Phan, Merav Strauss, Sherrie Tafuri, Karen Reue, Cholesterol and cholate components of an atherogenic diet induce distinct stages of hepatic inflammatory gene expression. Journal of Biological Chemistry. ,vol. 278, pp. 42774- 42784 ,(2003) , 10.1074/JBC.M306022200
Lisa R. Tannock, Kevin D. O’Brien, Robert H. Knopp, Barbara Retzlaff, Brian Fish, Mark H. Wener, Steven E. Kahn, Alan Chait, Cholesterol Feeding Increases C-Reactive Protein and Serum Amyloid A Levels in Lean Insulin-Sensitive Subjects Circulation. ,vol. 111, pp. 3058- 3062 ,(2005) , 10.1161/CIRCULATIONAHA.104.506188
Lars Verschuren, Jitske de Vries-van der Weij, Susanne Zadelaar, Robert Kleemann, Teake Kooistra, LXR agonist suppresses atherosclerotic lesion growth and promotes lesion regression in apoE*3Leiden mice: time course and mechanisms. Journal of Lipid Research. ,vol. 50, pp. 301- 311 ,(2009) , 10.1194/JLR.M800374-JLR200