Improved resolution haplogroup G phylogeny in the Y chromosome, revealed by a set of newly characterized SNPs.
作者： Lynn M. Sims , Dennis Garvey , Jack Ballantyne
DOI: 10.1371/JOURNAL.PONE.0005792
关键词: Single-nucleotide polymorphism 、 Population 、 Paragroup 、 Y chromosome 、 Haplogroup 、 Genetics 、 Genetic marker 、 Haplogroup CT 、 Biology 、 Haplotype
摘要: Background Y-SNP haplogroup G (hgG), defined by Y-SNP marker M201, is relatively uncommon in the United States general population, with only 8 additional sub-markers characterized. Many of previously described eight are either very rare (2–4%) or do not distinguish between major populations within this hg. In fact, prior to current study, 2% our reference Caucasian population belonged hgG and all these individuals were sub-haplogroup G2a, P15. Additional Y-SNPs needed order differentiate haplogroup.
harvard.edu
core.ac.uk
paperity.org
researchgate.net 参考文章(27)
Steve Rozen, Helen Skaletsky, Primer3 on the WWW for general users and for biologist programmers. Methods of Molecular Biology. ,vol. 132, pp. 365- 386 ,(2000) , 10.1385/1-59259-192-2:365
T. Y C. Consortium, A nomenclature system for the tree of human Y-chromosomal binary haplogroups Genome Research. ,vol. 12, pp. 339- 348 ,(2002) , 10.1101/GR.217602
B. S. Shastry, SNP alleles in human disease and evolution Journal of Human Genetics. ,vol. 47, pp. 561- 566 ,(2002) , 10.1007/S100380200086
Ann-Christine Syvänen, Toward genome-wide SNP genotyping Nature Genetics. ,vol. 37, pp. S5- S10 ,(2005) , 10.1038/NG1558
Anthony J. Brookes, The essence of SNPs. Gene. ,vol. 234, pp. 177- 186 ,(1999) , 10.1016/S0378-1119(99)00219-X
Mark A. Jobling, Chris Tyler-Smith, The human Y chromosome: an evolutionary marker comes of age Nature Reviews Genetics. ,vol. 4, pp. 598- 612 ,(2003) , 10.1038/NRG1124
Carlos Flores, Nicole Maca-Meyer, Jose M. Larruga, Vicente M. Cabrera, Naif Karadsheh, Ana M. Gonzalez, Isolates in a corridor of migrations: a high-resolution analysis of Y-chromosome variation in Jordan. Journal of Human Genetics. ,vol. 50, pp. 435- 441 ,(2005) , 10.1007/S10038-005-0274-4
Ashley Hall, Jack Ballantyne, The development of an 18-locus Y-STR system for forensic casework. Analytical and Bioanalytical Chemistry. ,vol. 376, pp. 1234- 1246 ,(2003) , 10.1007/S00216-003-2039-2
Cengiz Cinnioglu, Roy King, Toomas Kivisild, Ersi Kalfoglu, Sevil Atasoy, Gianpiero L. Cavalleri, Anita S. Lillie, Charles C. Roseman, Alice A. Lin, Kristina Prince, Peter J. Oefner, Peidong Shen, Ornella Semino, L. Luca Cavalli-Sforza, Peter A. Underhill, Excavating Y-chromosome haplotype strata in Anatolia Human Genetics. ,vol. 114, pp. 127- 148 ,(2004) , 10.1007/S00439-003-1031-4
Lynn M. Sims, Dennis Garvey, Jack Ballantyne, Sub‐populations within the major European and African derived haplogroups R1b3 and E3a are differentiated by previously phylogenetically undefined Y‐SNPs Human Mutation. ,vol. 28, pp. 97- 97 ,(2007) , 10.1002/HUMU.9469