Novel putative drivers revealed by targeted exome sequencing of advanced solid tumors

作者: Antonio Pannuti , Aleksandra Filipovic , Chindo Hicks , Elliot Lefkowitz , Travis Ptacek

DOI: 10.1371/JOURNAL.PONE.0194790

关键词: Cancer researchExome sequencingPersonalized medicineMutationBiologyDruggabilityClinical researchDNA sequencingNeuroendocrine tumorsSomatic evolution in cancer

摘要: Next generation sequencing (NGS) is becoming increasingly integrated into oncological practice and clinical research. NGS methods have also provided evidence for clonal evolution of cancers during disease progression treatment. The number variants associated with response to specific therapeutic agents keeps increasing. However, the identification novel driver mutations as opposed passenger (phenotypically silent or clinically irrelevant) remains a major challenge. We conducted targeted exome advanced solid tumors from 44 pre-treated patients including breast, colorectal lung carcinomas, neuroendocrine tumors, sarcomas others. catalogued established putative new drivers predicted by two distinct algorithms. we detected were consistent published observations. significant potential never described before in each tumor type studied. These belong key cell fate regulatory networks, potentially druggable pathways. Should our observations be confirmed, they would support hypothesis that are selected treatment aggressive indicate need longitudinal genomic testing inform second line cancer

参考文章(90)
Nicole Basset-Seguin, Nadem Soufir, Voie Patched/Sonic Hedgehog et carcinomes basocellulaires médecine/sciences. ,vol. 20, pp. 899- 903 ,(2004) , 10.1051/MEDSCI/20042010899
Sing Yu Moorcraft, David Gonzalez, Brian A. Walker, Understanding next generation sequencing in oncology: A guide for oncologists Critical Reviews in Oncology Hematology. ,vol. 96, pp. 463- 474 ,(2015) , 10.1016/J.CRITREVONC.2015.06.007
Rui Tian, Malay K Basu, Emidio Capriotti, Computational methods and resources for the interpretation of genomic variants in cancer BMC Genomics. ,vol. 16, pp. 1- 19 ,(2015) , 10.1186/1471-2164-16-S8-S7
Eiji Sakai, Ken Ohata, Hideyuki Chiba, Nobuyuki Matsuhashi, Noriteru Doi, Junichi Fukushima, Hiroki Endo, Hirokazu Takahashi, Shingo Tsuji, Koichi Yagi, Keisuke Matsusaka, Hiroyuki Aburatani, Atsushi Nakajima, Atsushi Kaneda, Methylation epigenotypes and genetic features in colorectal laterally spreading tumors. International Journal of Cancer. ,vol. 135, pp. 1586- 1595 ,(2014) , 10.1002/IJC.28814
Concetta Bubici, Salvatore Papa, JNK signalling in cancer: in need of new, smarter therapeutic targets British Journal of Pharmacology. ,vol. 171, pp. 24- 37 ,(2014) , 10.1111/BPH.12432
Tony Shen, Stefan Hans Pajaro-Van de Stadt, Nai Chien Yeat, Jimmy C.-H. Lin, Clinical applications of next generation sequencing in cancer: from panels, to exomes, to genomes Frontiers in Genetics. ,vol. 6, pp. 215- 215 ,(2015) , 10.3389/FGENE.2015.00215
Martine Tetreault, Eric Bareke, Javad Nadaf, Najmeh Alirezaie, Jacek Majewski, Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities Expert Review of Molecular Diagnostics. ,vol. 15, pp. 749- 760 ,(2015) , 10.1586/14737159.2015.1039516
Elisabetta Di Liso, Natale Pennelli, Gigliola Lodovichetti, Cristina Ghiotto, Angelo Paolo Dei Tos, PierFranco Conte, Laura Bonanno, Braf mutation in interdigitating dendritic cell sarcoma: a case report and review of the literature Cancer Biology & Therapy. ,vol. 16, pp. 1128- 1135 ,(2015) , 10.1080/15384047.2015.1057359
Nikos Kourtis, Alexandros Strikoudis, Iannis Aifantis, Emerging roles for the FBXW7 ubiquitin ligase in leukemia and beyond Current Opinion in Cell Biology. ,vol. 37, pp. 28- 34 ,(2015) , 10.1016/J.CEB.2015.09.003
Michael W. Schmitt, Lawrence A. Loeb, Jesse J. Salk, The influence of subclonal resistance mutations on targeted cancer therapy Nature Reviews Clinical Oncology. ,vol. 13, pp. 335- 347 ,(2016) , 10.1038/NRCLINONC.2015.175