Detection of PCR products using self-probing amplicons and fluorescence.

作者: David Whitcombe , Jane Theaker , Simon P. Guy , Tom Brown , Steve Little

DOI: 10.1038/11751

关键词: Primer (molecular biology)Molecular diagnosticsMultiplex ligation-dependent probe amplificationAmpliconBiological systemFluorophoreQuenching (fluorescence)FluorescenceMolecular biologyMolecular probeChemistry

摘要: Molecular diagnostics is progressing from low-throughput, heterogeneous, mostly manual technologies to higher throughput, closed-tube, and automated methods. Fluorescence the favored signaling technology for such assays, a number of techniques rely on energy transfer between fluorophore proximal quencher molecule. In these methods, dual-labeled probes hybridize an amplicon changes in quenching are detected. We describe new that simple use, gives highly specific information, avoids major difficulties alternative It uses primer with integral tail used probe extension product primer. The probing target sequence thereby converted into unimolecular event, which has substantial benefits terms kinetics, thermodynamics, assay design, reliability.

参考文章(20)
S Vaudin, G Malone, M J Schwarz, N H Robertson, R M Ferrie, S Little, M Super, Development, multiplexing, and application of ARMS tests for common mutations in the CFTR gene. American Journal of Human Genetics. ,vol. 51, pp. 251- 262 ,(1992)
C.T. Wittwer, K.M. Ririe, R.V. Andrew, D.A. David, R.A. Gundry, U.J. Balis, The LightCycler: a microvolume multisample fluorimeter with rapid temperature control BioTechniques. ,vol. 22, pp. 176- 181 ,(1997) , 10.2144/97221PF02
Carl T. Wittwer, Mark G. Herrmann, Alan A. Moss, Randy P. Rasmussen, Continuous fluorescence monitoring of rapid cycle DNA amplification. BioTechniques. ,vol. 22, pp. 130- 138 ,(1997) , 10.2144/000114043
Neil J Gibson, Helen L Gillard, David Whitcombe, Richard M Ferrie, Clive R Newton, Stephen Little, A homogeneous method for genotyping with fluorescence polarization Clinical Chemistry. ,vol. 43, pp. 1336- 1341 ,(1997) , 10.1093/CLINCHEM/43.8.1336
M.S. Ibrahim, J.J. Esposito, P.B. Jahrling, R.S. Lofts, The potential of 5' nuclease PCR for detecting a single-base polymorphism in Orthopoxvirus. Molecular and Cellular Probes. ,vol. 11, pp. 143- 147 ,(1997) , 10.1006/MCPR.1996.0093
T. Ishiguro, J. Saitoh, H. Yawata, H. Yamagishi, S. Iwasaki, Y. Mitoma, Homogeneous quantitative assay of hepatitis C virus RNA by polymerase chain reaction in the presence of a fluorescent intercalater. Analytical Biochemistry. ,vol. 229, pp. 207- 213 ,(1995) , 10.1006/ABIO.1995.1404
Sanjay Tyagi, Fred Russell Kramer, Molecular Beacons: Probes that Fluoresce upon Hybridization Nature Biotechnology. ,vol. 14, pp. 303- 308 ,(1996) , 10.1038/NBT0396-303
M. Sofi Ibrahim, Richard S. Lofts, Peter B. Jahrling, Erik A. Henchal, Victor W. Weedn, M. Allen Northrup, Phillip Belgrader, Real-Time Microchip PCR for Detecting Single-Base Differences in Viral and Human DNA Analytical Chemistry. ,vol. 70, pp. 2013- 2017 ,(1998) , 10.1021/AC971091U
Fergus J. Couch, Linda M. Farid, Michelle L. DeShano, Sean V. Tavtigian, Kathleen Calzone, Lisa Campeau, Yi Peng, Bert Bogden, Qian Chen, Susan Neuhausen, Donna Shattuck-Eidens, Andrew K. Godwin, Mary Daly, Diane M. Radford, Scott Sedlacek, Johanna Rommens, Jacques Simard, Judy Garber, Sofia Merajver, Barbara L. Weber, BRCA2 germline mutations in male breast cancer cases and breast cancer families. Nature Genetics. ,vol. 13, pp. 123- 125 ,(1996) , 10.1038/NG0596-123
Sanjay Tyagi, Diana P. Bratu, Fred Russell Kramer, Multicolor molecular beacons for allele discrimination Nature Biotechnology. ,vol. 16, pp. 49- 53 ,(1998) , 10.1038/NBT0198-49