Raman spectroscopic identification of Mycobacterium tuberculosis.

作者: Stephan Stöckel , Susann Meisel , Björn Lorenz , Sandra Kloß , Sandra Henk

DOI: 10.1002/JBIO.201600174

关键词: Identification (biology)Species levelPulmonary tuberculosisRaman spectroscopyMycobacterium tuberculosis complexMicrobiologyAntibioticsMycobacterium tuberculosisNontuberculous mycobacteriaBiology

摘要: In this study, Raman microspectroscopy has been utilized to identify mycobacteria the species level. Because of slow growth mycobacteria, per se cultivation-independent emerges as a perfect tool for rapid on-the-spot mycobacterial diagnostic test. Special focus was laid upon identification Mycobacterium tuberculosis complex (MTC) strains, main causative agent pulmonary worldwide, and differentiation between pathogenic commensal nontuberculous (NTM). Overall proposed model considers 26 different well antibiotic susceptible resistant strains. More than 8800 spectra single bacterial cells constituted spectral library, which foundation two-level classification system including three support vector machines. Our allowed discrimination MTC samples in an independent validation dataset with accuracy 94% could serve basis further improve microscopy first-line point-of-care confirmation disease.

参考文章(35)
A. Lewin, S. Sharbati-Tehrani, Das langsame Wachstum von Mykobakterien Bundesgesundheitsblatt-gesundheitsforschung-gesundheitsschutz. ,vol. 48, pp. 1390- 1399 ,(2005) , 10.1007/S00103-005-1171-X
Stephan Stöckel, Andrei Sebastian Stanca, Jonathan Helbig, Petra Rösch, Jürgen Popp, Raman spectroscopic monitoring of the growth of pigmented and non-pigmented mycobacteria. Analytical and Bioanalytical Chemistry. ,vol. 407, pp. 8919- 8923 ,(2015) , 10.1007/S00216-015-9031-5
Sandra Kloß, Björn Lorenz, Stefan Dees, Ines Labugger, Petra Rösch, Jürgen Popp, Destruction-free procedure for the isolation of bacteria from sputum samples for Raman spectroscopic analysis. Analytical and Bioanalytical Chemistry. ,vol. 407, pp. 8333- 8341 ,(2015) , 10.1007/S00216-015-8743-X
Clara Sousa, Filipa Grosso, Luís Meirinhos‐Soares, Luísa Peixe, Joao Lopes, Identification of carbapenem-resistant Acinetobacter baumannii clones using infrared spectroscopy Journal of Biophotonics. ,vol. 7, pp. 287- 294 ,(2014) , 10.1002/JBIO.201200075
Michaela Harz, Michael Kiehntopf, Stephan Stöckel, Petra Rösch, Eberhard Straube, Thomas Deufel, Jürgen Popp, Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy. Journal of Biophotonics. ,vol. 2, pp. 70- 80 ,(2009) , 10.1002/JBIO.200810068
Miroslav Morháč, An algorithm for determination of peak regions and baseline elimination in spectroscopic data Nuclear Instruments & Methods in Physics Research Section A-accelerators Spectrometers Detectors and Associated Equipment. ,vol. 600, pp. 478- 487 ,(2009) , 10.1016/J.NIMA.2008.11.132
Abdullah Chandra Sekhar Talari, Zanyar Movasaghi, Shazza Rehman, Ihtesham ur Rehman, Raman spectroscopy of biological tissues Applied Spectroscopy Reviews. ,vol. 42, pp. 493- 541 ,(2007) , 10.1080/05704928.2014.923902
François Barbier, Antoine Andremont, Michel Wolff, Lila Bouadma, Hospital-acquired pneumonia and ventilator-associated pneumonia: recent advances in epidemiology and management. Current Opinion in Pulmonary Medicine. ,vol. 19, pp. 216- 228 ,(2013) , 10.1097/MCP.0B013E32835F27BE
Rekha Gautam, Mukta Deobagkar‐Lele, Shamik Majumdar, Bhagawat Chandrasekar, Emmanuel Victor, Syed Moiz Ahmed, Nitin Wadhwa, Taru Verma, Srividya Kumar, Nagalingam Ravi Sundaresan, Siva Umapathy, Dipankar Nandi, None, Molecular profiling of sepsis in mice using Fourier Transform Infrared Microspectroscopy Journal of Biophotonics. ,vol. 9, pp. 67- 82 ,(2016) , 10.1002/JBIO.201400089
Isabelle Espagnon, Denis Ostrovskii, Raphaël Mathey, Mathieu Dupoy, Pierre L. Joly, Armelle Novelli-Rousseau, Frédéric Pinston, Olivier Gal, Frédéric Mallard, Denis F. Leroux, Direct identification of clinically relevant bacterial and yeast microcolonies and macrocolonies on solid culture media by Raman spectroscopy. Journal of Biomedical Optics. ,vol. 19, pp. 027004- 027004 ,(2014) , 10.1117/1.JBO.19.2.027004