Integrated microRNA-mRNA analysis revealing the potential roles of microRNAs in tongue squamous cell cancer

作者: XIAO-LI ZHOU , JUN-HUA WU , XIN-JUAN WANG , FU-JUN GUO

DOI: 10.3892/MMR.2015.3467

关键词: Regulation of gene expressionCancer researchCarcinogenesisDNA microarrayBiologyGene expression profilingmicroRNAGene regulatory networkGeneticsOncogeneKEGG

摘要: Tongue squamous cell carcinoma (TSCC) is a rare and aggressive type of cancer, which associated with poor prognosis. Identification patients at high risk TSCC tumorigenesis may provide information for the early detection metastases, potential treatment strategies. MicroRNA (miRNA; miR) mRNA expression profiling tissue samples normal control were obtained from three Gene Expression Omnibus (GEO) data series. Bioinformatics analyses, including Ontology (GO) Kyoto Encyclopedia Genes Genomes used to identify genes pathways specifically miRNA-associated oncology. A total 25 miRNAs 769 mRNAs differentially expressed in two groups assessed, all miRNA target interactions analyzed. The predominantly 38 GO terms 13 pathways. Of between groups, confirmed another GEO series, miRNA-494, miRNA-96, miRNA-183, runt-related transcription factor 1, programmed death protein 4 membrane-associated guanylate kinase most significantly altered, be central regulation TSCC. analyze large quantities microarrays through rigorous experimental planning, statistical analysis collection complete on In present study, novel differential miRNA-mRNA network was constructed, further investigation targets diagnosis

参考文章(46)
Anindya Dutta, Yong Sun Lee, MicroRNAs: small but potent oncogenes or tumor suppressors. Current opinion in investigational drugs. ,vol. 7, pp. 560- 564 ,(2006)
F. Carinci, L. Lo Muzio, A. Piattelli, C. Rubini, F. Chiesa, F. Ionna, A. Palmieri, E. Maiorano, A. Pastore, G. Laino, G. Favia, M. Dolci, F. Pezzetti, Potential markers of tongue tumor progression selected by cDNA microarray. International Journal of Immunopathology and Pharmacology. ,vol. 18, pp. 513- 524 ,(2005) , 10.1177/039463200501800311
Ming Yi, JayD Horton, JonathanC Cohen, HelenH Hobbs, RobertM Stephens, WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data BMC Bioinformatics. ,vol. 7, pp. 30- 30 ,(2006) , 10.1186/1471-2105-7-30
Hyun Min Jung, Brittany L. Phillips, Rushi S. Patel, Donald M. Cohen, Andrew Jakymiw, William W. Kong, Jin Q. Cheng, Edward K. L. Chan, Keratinization-associated miR-7 and miR-21 Regulate Tumor Suppressor Reversion-inducing Cysteine-rich Protein with Kazal Motifs (RECK) in Oral Cancer Journal of Biological Chemistry. ,vol. 287, pp. 29261- 29272 ,(2012) , 10.1074/JBC.M112.366518
Daisuke Sano, Jeffrey N. Myers, Metastasis of squamous cell carcinoma of the oral tongue Cancer and Metastasis Reviews. ,vol. 26, pp. 645- 662 ,(2007) , 10.1007/S10555-007-9082-Y
Serena Formica, Guido Biasco, Margherita Nannini, Maria Abbondanza Pantaleo, Alessandra Maleddu, Annalisa Astolfi, Gene expression profiling in colorectal cancer using microarray technologies: Results and perspectives Cancer Treatment Reviews. ,vol. 35, pp. 201- 209 ,(2009) , 10.1016/J.CTRV.2008.10.006
Wensheng Zhang, Andrea Edwards, Wei Fan, Erik K. Flemington, Kun Zhang, miRNA-mRNA Correlation-Network Modules in Human Prostate Cancer and the Differences between Primary and Metastatic Tumor Subtypes PLoS ONE. ,vol. 7, pp. e40130- ,(2012) , 10.1371/JOURNAL.PONE.0040130
Shigeyuki Ozawa, Yasumasa Kato, Reika Komori, Yojiro Maehata, Eiro Kubota, Ryu-Ichiro Hata, BRAK/CXCL14 expression suppresses tumor growth in vivo in human oral carcinoma cells. Biochemical and Biophysical Research Communications. ,vol. 348, pp. 406- 412 ,(2006) , 10.1016/J.BBRC.2006.07.070
Xi Chen, Lily Wang, Integrating biological knowledge with gene expression profiles for survival prediction of cancer. Journal of Computational Biology. ,vol. 16, pp. 265- 278 ,(2009) , 10.1089/CMB.2008.12TT
Jutta Ries, Eleftherios Vairaktaris, Abbas Agaimy, Rita Kintopp, Christoph Baran, Friedrich W Neukam, Emeka Nkenke, None, miR-186, miR-3651 and miR-494: potential biomarkers for oral squamous cell carcinoma extracted from whole blood. Oncology Reports. ,vol. 31, pp. 1429- 1436 ,(2014) , 10.3892/OR.2014.2983