Aberrations of the classic codon reading scheme during protein synthesis in vitro.

作者: T. Samuelsson , P. Elias , F. Lustig , T. Axberg , G. Fölsch

DOI: 10.1016/S0021-9258(19)85533-3

关键词: Codon usage biasAlanineTransfer RNAUridine monophosphateGeneticsGenetic codeBiologyOpen reading frameBase pairCistron

摘要: Using a protein synthesizing in vitro system programmed with MS2-RNA, the ability of alanine tRNAs anticodons U*GC (U* represents 5-oxyacetic acid uridine monophosphate) and IGC to read codons coat cistron MS2 has been determined both under conditions no competition, where alanyl-tRNA used was only aminoacylated tRNAAla present system, experiments two alanyl-tRNAs were competing against each other. Under can all four codons. However, when compete for codon GCC, anticodon IGC, which three positions according rules Watson-Crick base pairing, is considerably more efficient than U*GC, misreads by reading first presumably disregards third nucleotide codon. The outcome competition also reveals apparent violations wobble restrictions: reads GUU almost as effectively does effective GCG.

参考文章(20)
U. Lagerkvist, "Two out of three": an alternative method for codon reading. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 75, pp. 1759- 1762 ,(1978) , 10.1073/PNAS.75.4.1759
David Hirsh, Tryptophan transfer RNA as the UGA suppressor Journal of Molecular Biology. ,vol. 58, pp. 439- 458 ,(1971) , 10.1016/0022-2836(71)90362-7
T.A. Kruse, B.F.C. Clark, M. Sprinzl, The effect of specific structural modification on the biological activity of E.coli arginine tRNA Nucleic Acids Research. ,vol. 5, pp. 879- 892 ,(1978) , 10.1093/NAR/5.3.879
C. G. Kurland, R. Rigler, M. Ehrenberg, C. Blomberg, Allosteric mechanism for codon-dependent tRNA selection on ribosomes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 72, pp. 4248- 4251 ,(1975) , 10.1073/PNAS.72.11.4248
R.J. Williams, W. Nagel, B. Roe, B. Dudock, Primary structure of E. coli alanine transfer RNA: relation to the yeast phenylalanyl tRNA synthetase recognition site. Biochemical and Biophysical Research Communications. ,vol. 60, pp. 1215- 1221 ,(1974) , 10.1016/0006-291X(74)90328-3
Emanuel Goldman, W.Michael Holmes, G.Wesley Hatfield, Specificity of codon recognition by Escherichia coli tRNALeu isoaccepting species determined by protein synthesis in vitro directed by phage RNA. Journal of Molecular Biology. ,vol. 129, pp. 567- 585 ,(1979) , 10.1016/0022-2836(79)90469-8
Michael D. Topal, Jacques R. Fresco, Base pairing and fidelity in codon-anticodon interaction Nature. ,vol. 263, pp. 289- 293 ,(1976) , 10.1038/263289A0
Elias Per, Lustig Florentyna, Axberg Torsten, Åkesson Bergt, Ulf Lagerkvist, Readinbg of the lysine codons in the MS 2 coat protein cistron during protein synthesis in vitro FEBS Letters. ,vol. 98, pp. 145- 151 ,(1979) , 10.1016/0014-5793(79)80171-4
David Hirsh, Lawrence Gold, Translation of the UGA triplet in vitro by tryptophan transfer RNA's Journal of Molecular Biology. ,vol. 58, pp. 459- 468 ,(1971) , 10.1016/0022-2836(71)90363-9