Rotavirus RNA polymerases resolve into two phylogenetically distinct classes that differ in their mechanism of template recognition
作者： Kristen M. Ogden , Reimar Johne , John T. Patton
DOI: 10.1016/J.VIROL.2012.05.011
关键词: Polymerase 、 Double-stranded RNA viruses 、 Sequence analysis 、 DNA 、 RNA 、 Biology 、 Clade 、 RNA polymerase 、 Rotavirus 、 Genetics
摘要: Rotaviruses (RVs) are segmented double-stranded RNA viruses that cause gastroenteritis in mammals and birds. Within the RV genus, eight species (RVA-RVH) have been proposed. Here, we report first RVF RVG sequences for viral polymerase (VP1)-encoding segments compare them to those of other species. Phylogenetic analyses indicate VP1 proteins resolve into two major clades, with RVA, RVC, RVD clade A, RVB, RVH B. Plus-strand A viruses, not B contain a 3'-proximal UGUG cassette serves as recognition signal. structures representative each were predicted using homology modeling. Structural elements involved interactions conserved among suggesting mechanism these viruses.
openagrar.de参考文章(18)
Ethan C Settembre, James Z Chen, Philip R Dormitzer, Nikolaus Grigorieff, Stephen C Harrison, Atomic model of an infectious rotavirus particle. The EMBO Journal. ,vol. 30, pp. 408- 416 ,(2010) , 10.1038/EMBOJ.2010.322
Souvik Ghosh, N. Kobayashi, S. Nagashima, M. Chawla-Sarkar, T. Krishnan, B. Ganesh, T. N. Naik, Molecular characterization of the VP1, VP2, VP4, VP6, NSP1 and NSP2 genes of bovine group B rotaviruses: identification of a novel VP4 genotype Archives of Virology. ,vol. 155, pp. 159- 167 ,(2010) , 10.1007/S00705-009-0555-X
Jelle Matthijnssens, Peter H. Otto, Max Ciarlet, Ulrich Desselberger, Marc Van Ranst, Reimar Johne, VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Archives of Virology. ,vol. 157, pp. 1177- 1182 ,(2012) , 10.1007/S00705-012-1273-3
Eva Trojnar, Peter Otto, Reimar Johne, The first complete genome sequence of a chicken group A rotavirus indicates independent evolution of mammalian and avian strains. Virology. ,vol. 386, pp. 325- 333 ,(2009) , 10.1016/J.VIROL.2009.01.034
Muzahed U. Ahmed, Nobumichi Kobayashi, Mitsutaka Wakuda, Takeshi Sanekata, Koki Taniguchi, Abdul Kader, Trailokya N. Naik, Masaho Ishino, Md. Mahbub Alam, Kazunobu Kojima, Keiji Mise, Ayako Sumi, Genetic analysis of group B human rotaviruses detected in Bangladesh in 2000 and 2001. Journal of Medical Virology. ,vol. 72, pp. 149- 155 ,(2004) , 10.1002/JMV.10546
Ambrish Roy, Alper Kucukural, Yang Zhang, I-TASSER: a unified platform for automated protein structure and function prediction Nature Protocols. ,vol. 5, pp. 725- 738 ,(2010) , 10.1038/NPROT.2010.5
Shigeo Nagashima, Nobumichi Kobayashi, Masaho Ishino, Mohammed Mahbub Alam, Muzahed Uddin Ahmed, Shyamal Kumar Paul, Balasubramanian Ganesh, Mamta Chawla-Sarkar, Triveni Krishnan, Trailokya Nath Naik, Yuan-Hong Wang, Whole genomic characterization of a human rotavirus strain B219 belonging to a novel group of the genus Rotavirus. Journal of Medical Virology. ,vol. 80, pp. 2023- 2033 ,(2008) , 10.1002/JMV.21286
Zhilin Chen, Paul R Lambden, Jeshen Lau, E.Owen Caul, Ian N Clarke, Human group C rotavirus: completion of the genome sequence and gene coding assignments of a non-cultivatable rotavirus Virus Research. ,vol. 83, pp. 179- 187 ,(2002) , 10.1016/S0168-1702(01)00442-7
Reimar Johne, Peter Otto, Bernhard Roth, Ulrich Löhren, David Belnap, Jochen Reetz, Eva Trojnar, Sequence analysis of the VP6-encoding genome segment of avian group F and G rotaviruses Virology. ,vol. 412, pp. 384- 391 ,(2011) , 10.1016/J.VIROL.2011.01.031
M. S. McNulty, D. Todd, G. M. Allan, J. B. McFerran, J. A. Greene, Epidemiology of rotavirus infection in broiler chickens: recognition of four serogroups. Archives of Virology. ,vol. 81, pp. 113- 121 ,(1984) , 10.1007/BF01309301