Structure and dimerization of the kinase domain from yeast Snf1, a member of the Snf1/AMPK protein family.

作者: Vinod Nayak , Kehao Zhao , Anastasia Wyce , Marc F. Schwartz , Wan-Sheng Lo

DOI: 10.1016/J.STR.2005.12.008

关键词: BiochemistrySH3 domainMAP kinase kinase kinaseCyclin-dependent kinase 2Mitogen-activated protein kinase kinasec-RafCyclin-dependent kinase 9BiologyAMPKASK1

摘要: Summary The Snf1/AMPK kinases are intracellular energy sensors, and the AMPK pathway has been implicated in a variety of metabolic human disorders. Here we report crystal structure kinase domain from yeast Snf1, revealing bilobe fold with greatest homology to cyclin-dependant kinase-2. Unexpectedly, also reveals novel homodimer that show forms solution, as demonstrated by equilibrium sedimentation, cells, shown coimmunoprecipitation differentially tagged intact Snf1. A mapping sequence conservation suggests dimer formation is conserved feature kinases. conformation αC helix, burial activation segment substrate binding site within dimer, it represents an inactive form kinase. Taken together, these studies suggest another layer regulation family, avenue for development AMPK-specific activating compounds.

参考文章(34)
Wan-Sheng Lo, Eric R Gamache, Karl W Henry, David Yang, Lorraine Pillus, Shelley L Berger, Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms The EMBO Journal. ,vol. 24, pp. 997- 1008 ,(2005) , 10.1038/SJ.EMBOJ.7600577
Angela Woods, Stephen R. Johnstone, Kristina Dickerson, Fiona C. Leiper, Lee G.D. Fryer, Dietbert Neumann, Uwe Schlattner, Theo Wallimann, Marian Carlson, David Carling, LKB1 Is the Upstream Kinase in the AMP-Activated Protein Kinase Cascade Current Biology. ,vol. 13, pp. 2004- 2008 ,(2003) , 10.1016/J.CUB.2003.10.031
Morgan Huse, John Kuriyan, The Conformational Plasticity of Protein Kinases Cell. ,vol. 109, pp. 275- 282 ,(2002) , 10.1016/S0092-8674(02)00741-9
Brian D. Strahl, C. David Allis, The language of covalent histone modifications. Nature. ,vol. 403, pp. 41- 45 ,(2000) , 10.1038/47412
Nandita Nath, Rhonda R. McCartney, Martin C. Schmidt, Purification and Characterization of Snf1 Kinase Complexes Containing a Defined β Subunit Composition Journal of Biological Chemistry. ,vol. 277, pp. 50403- 50408 ,(2002) , 10.1074/JBC.M207058200
Maria Carla Parrini, Ming Lei, Stephen C. Harrison, Bruce J. Mayer, Pak1 kinase homodimers are autoinhibited in trans and dissociated upon activation by Cdc42 and Rac1. Molecular Cell. ,vol. 9, pp. 73- 83 ,(2002) , 10.1016/S1097-2765(01)00428-2
Yasuhiko Minokoshi, Young-Bum Kim, Odile D. Peroni, Lee G. D. Fryer, Corinna Müller, David Carling, Barbara B. Kahn, Leptin stimulates fatty-acid oxidation by activating AMP-activated protein kinase Nature. ,vol. 415, pp. 339- 343 ,(2002) , 10.1038/415339A
R Jiang, M Carlson, Glucose regulates protein interactions within the yeast SNF1 protein kinase complex. Genes & Development. ,vol. 10, pp. 3105- 3115 ,(1996) , 10.1101/GAD.10.24.3105