In Silico Mining of Conserved miRNAs of Indian Catfish Clarias batrachus (Linnaeus, 1758) from the Contigs, ESTs, and BAC End Sequences

作者: Suyash Agarwal , N S Nagpure , Prachi Srivastava , Ravindra Kumar , Manmohan Pandey

DOI: 10.1007/S12010-016-2373-4

关键词: RNA interferenceBacterial artificial chromosomeBiologyGeneFunctional genomicsGenomicsIn silicoGeneticsCatfishContig

摘要: MicroRNAs are small non-coding RNAs which play significant role in RNA interference. The present work deals with mining of the conserved miRNA and their target genes from the …

参考文章(59)
Ian Korf, Gene finding in novel genomes BMC Bioinformatics. ,vol. 5, pp. 59- 59 ,(2004) , 10.1186/1471-2105-5-59
Biao Yan, Jin-Tao Guo, Li-Hui Zhao, Jin-Liang Zhao, MiR-30c: A novel regulator of salt tolerance in tilapia Biochemical and Biophysical Research Communications. ,vol. 425, pp. 315- 320 ,(2012) , 10.1016/J.BBRC.2012.07.088
J. T. Simpson, K. Wong, S. D. Jackman, J. E. Schein, S. J.M. Jones, I. Birol, ABySS: A parallel assembler for short read sequence data Genome Research. ,vol. 19, pp. 1117- 1123 ,(2009) , 10.1101/GR.089532.108
Varadharajan Vaishnavi, Mayakannan Manikandan, Arasambattu Kannan Munirajan, Mining the 3′UTR of Autism-implicated Genes for SNPs Perturbing MicroRNA Regulation Genomics, Proteomics & Bioinformatics. ,vol. 12, pp. 92- 104 ,(2014) , 10.1016/J.GPB.2014.01.003
Andrie Koutsoulidou, Nikolaos P Mastroyiannopoulos, Denis Furling, James B Uney, Leonidas A Phylactou, Expression of miR-1, miR-133a, miR-133b and miR-206 increases during development of human skeletal muscle BMC Developmental Biology. ,vol. 11, pp. 34- 34 ,(2011) , 10.1186/1471-213X-11-34
Ailbhe M. McDermott, Helen M. Heneghan, Nicola Miller, Michael J. Kerin, The therapeutic potential of microRNAs: disease modulators and drug targets. Pharmaceutical Research. ,vol. 28, pp. 3016- 3029 ,(2011) , 10.1007/S11095-011-0550-2
Dominic Grün, Yi-Lu Wang, David Langenberger, Kristin C Gunsalus, Nikolaus Rajewsky, None, microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets PLOS Computational Biology. ,vol. 1, pp. 51- 66 ,(2005) , 10.1371/JOURNAL.PCBI.0010013
Luke Pase, Judith E. Layton, Wigard P. Kloosterman, Duncan Carradice, Peter M. Waterhouse, Graham J. Lieschke, miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2 Blood. ,vol. 113, pp. 1794- 1804 ,(2009) , 10.1182/BLOOD-2008-05-155812