Next-generation sequencing fails to identify human virus sequences in cutaneous squamous cell carcinoma.

作者: Tina Ganzenmueller , Yuri Yakushko , Jeanette Kluba , Cornelia Henke-Gendo , Ralf Gutzmer

DOI: 10.1002/IJC.27581

关键词: DNA sequencingMerkel cell polyomavirusSkin cancerHomology (biology)PyrosequencingHuman VirusBiologyVirologycDNA libraryDigital transcriptome subtraction

摘要: … of 31 cutaneous SCCs by high-throughput sequencing (Illumina) failed to detect active HPV expression in any of the tumor samples.10 This suggests that HPV may not play role in the …

参考文章(22)
F. Disant, J. Finaz De Villaine, A. Claudy, G. Dureau, C. Pouteil-Noble, S. Euvrard, J. Thivolet, J. Kanitakis, Aggressive squamous cell carcinomas in organ transplant recipients. International workshop on alloantigenic systems in the rat. ,vol. 27, pp. 1767- 1768 ,(1995)
Stephen F. Altschul, Warren Gish, Local alignment statistics. Methods in Enzymology. ,vol. 266, pp. 460- 480 ,(1996) , 10.1016/S0076-6879(96)66029-7
S Tuttleton Arron, L Jennings, I Nindl, F Rosl, JN Bouwes Bavinck, D Seçkin, M Trakatelli, GM Murphy, Viral Working Group of the International Transplant Skin Cancer Collaborative (ITSCC) & Skin Care in Organ Transplant Patients, Europe (SCOPE), Viral oncogenesis and its role in nonmelanoma skin cancer. British Journal of Dermatology. ,vol. 164, pp. 1201- 1213 ,(2011) , 10.1111/J.1365-2133.2011.10322.X
Rachel M. Schowalter, Diana V. Pastrana, Katherine A. Pumphrey, Adam L. Moyer, Christopher B. Buck, Merkel Cell Polyomavirus and Two Previously Unknown Polyomaviruses Are Chronically Shed from Human Skin Cell Host & Microbe. ,vol. 7, pp. 509- 515 ,(2010) , 10.1016/J.CHOM.2010.05.006
H.-H. Chou, M. H. Holmes, DNA sequence quality trimming and vector removal Bioinformatics. ,vol. 17, pp. 1093- 1104 ,(2001) , 10.1093/BIOINFORMATICS/17.12.1093
Aleksandar D Kostic, Akinyemi I Ojesina, Chandra Sekhar Pedamallu, Joonil Jung, Roel G W Verhaak, Gad Getz, Matthew Meyerson, PathSeq: software to identify or discover microbes by deep sequencing of human tissue Nature Biotechnology. ,vol. 29, pp. 393- 396 ,(2011) , 10.1038/NBT.1868
Ahmad Kassem, Kristin Technau, Anna Kordelia Kurz, Deepa Pantulu, Marie Löning, Gian Kayser, Elmar Stickeler, Wolfgang Weyers, Carlos Diaz, Martin Werner, Dorothee Nashan, Axel zur Hausen, Merkel cell polyomavirus sequences are frequently detected in nonmelanoma skin cancer of immunosuppressed patients International Journal of Cancer. ,vol. 125, pp. 356- 361 ,(2009) , 10.1002/IJC.24323
R Adamson, E Obispo, S Dychter, W Dembitsky, R Moreno-Cabral, B Jaski, J Gordon, P Hoagland, K Moore, J King, J Andrews, M Rich, P.O Daily, High incidence and clinical course of aggressive skin cancer in heart transplant patients: a single-center study. The International Congress on Immunosuppression. ,vol. 30, pp. 1124- 1126 ,(1998) , 10.1016/S0041-1345(98)00178-X
MARLEEN M. HARTEVELT, JAN N. BOUWES BAVINCK, ANTOINETTE M. M. KOOTTE, BERT J. VERMEER, JAN P. VANDENBROUCKE, Incidence of skin cancer after renal transplantation in The Netherlands. Transplantation. ,vol. 49, pp. 506- 509 ,(1990) , 10.1097/00007890-199003000-00006