CDD: NCBI's conserved domain database

作者: Aron Marchler-Bauer , Myra K. Derbyshire , Noreen R. Gonzales , Shennan Lu , Farideh Chitsaz

DOI: 10.1093/NAR/GKU1221

关键词: Protein domainAnnotationBioinformaticsDomain (software engineering)Domain modelEntrezComputational biologyData curationConserved Domain DatabaseBiologyConserved sequence

摘要: NCBI's CDD, the Conserved Domain Database, enters its 15 th year as a public resource for the annotation of proteins with the location of conserved domain footprints. Going forward, …

参考文章(13)
Aron Marchler-Bauer, John B Anderson, Carol DeWeese-Scott, Natalie D Fedorova, Lewis Y Geer, Siqian He, David I Hurwitz, John D Jackson, Aviva R Jacobs, Christopher J Lanczycki, Cynthia A Liebert, Chunlei Liu, Thomas Madej, Gabriele H Marchler, Raja Mazumder, Anastasia N Nikolskaya, Anna R Panchenko, Bachoti S Rao, Benjamin A Shoemaker, Vahan Simonyan, James S Song, Paul A Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A Yamashita, Jodie J Yin, Stephen H Bryant, CDD: a curated Entrez database of conserved domain alignments Nucleic Acids Research. ,vol. 31, pp. 383- 387 ,(2003) , 10.1093/NAR/GKG087
Daniel H. Haft, Jeremy D. Selengut, Roland A. Richter, Derek Harkins, Malay K. Basu, Erin Beck, TIGRFAMs and Genome Properties in 2013 Nucleic Acids Research. ,vol. 41, pp. 387- 395 ,(2012) , 10.1093/NAR/GKS1234
Christopher H. Gray, Lynn C. McGarry, Heather J. Spence, Alan Riboldi-Tunnicliffe, Bradford W. Ozanne, Novel β-Propeller of the BTB-Kelch Protein Krp1 Provides a Binding Site for Lasp-1 That Is Necessary for Pseudopodial Extension Journal of Biological Chemistry. ,vol. 284, pp. 30498- 30507 ,(2009) , 10.1074/JBC.M109.023259
A. Marchler-Bauer, S. H. Bryant, CD-Search: protein domain annotations on the fly Nucleic Acids Research. ,vol. 32, pp. 327- 331 ,(2004) , 10.1093/NAR/GKH454
Ivica Letunic, Tobias Doerks, Peer Bork, SMART: recent updates, new developments and status in 2015 Nucleic Acids Research. ,vol. 43, pp. 257- 260 ,(2015) , 10.1093/NAR/GKU949
William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O’Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana Tatusova, The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Research. ,vol. 37, pp. 216- 223 ,(2009) , 10.1093/NAR/GKN734
Lewis Y Geer, Michael Domrachev, David J Lipman, Stephen H Bryant, CDART: Protein Homology by Domain Architecture Genome Research. ,vol. 12, pp. 1619- 1623 ,(2002) , 10.1101/GR.278202
Thomas Madej, Christopher J. Lanczycki, Dachuan Zhang, Paul A. Thiessen, Renata C. Geer, Aron Marchler-Bauer, Stephen H. Bryant, MMDB and VAST+: tracking structural similarities between macromolecular complexes Nucleic Acids Research. ,vol. 42, pp. 297- 303 ,(2014) , 10.1093/NAR/GKT1208
M. K. Derbyshire, C. J. Lanczycki, S. H. Bryant, A. Marchler-Bauer, Annotation of functional sites with the Conserved Domain Database. Database. ,vol. 2012, ,(2012) , 10.1093/DATABASE/BAR058
Alejandro A Schäffer, L Aravind, Thomas L Madden, Sergei Shavirin, John L Spouge, Yuri I Wolf, Eugene V Koonin, Stephen F Altschul, Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements Nucleic Acids Research. ,vol. 29, pp. 2994- 3005 ,(2001) , 10.1093/NAR/29.14.2994