Consensus multiplex PCR–restriction fragment length polymorphism (RFLP) for rapid detection of plant mitochondrial DNA polymorphism

作者: H. CHEN , M. SUN

DOI: 10.1046/J.1365-294X.1998.00476.X

关键词: MultiplexBiologyPopulationGeneMitochondrial DNAAmpliconMultiplex polymerase chain reactionGeneticsGenomeRestriction fragment length polymorphism

摘要: A fast, simple, and efficient approach, termed consensus multiplex PCRÐRFLP, was developed employed to detect mitochondrial (mt)DNA variation in three orchid species, Spiranthes hongkongensis, S. sinensis, spiralis. Using PCR, pairs of mitchondrial primers were added simultaneously into each reaction tube amplify nonoverlapping introns located the NADH dehydrogenase genes. Fragment length differences PCR amplicons directly detectable between spiralis other two species. Further restriction analysis revealed sufficient mtDNA polymorphism, suitable for phylogenetic studies at interspecific level. This approach is well suited large-scale population surveys genome diversity plants. Additionally, maternal mode inheritance organelle genomes renders this valuable rapid identification origin specific parentage hybrid or allopolyploid

参考文章(11)
Jeffrey Doyle, DNA Protocols for Plants Molecular Techniques in Taxonomy. pp. 283- 293 ,(1991) , 10.1007/978-3-642-83962-7_18
Kary B. Mullis, Fred A. Faloona, Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods in Enzymology. ,vol. 155, pp. 335- 350 ,(1987) , 10.1016/0076-6879(87)55023-6
Kenneth H Wolfe, Wen-Hsiung Li, Paul M Sharp, Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 84, pp. 9054- 9058 ,(1987) , 10.1073/PNAS.84.24.9054
Mei Sun, THE ALLOPOLYPLOID ORIGIN OF SPIRANTHES HONGKONGENSIS (ORCHIDACEAE) American Journal of Botany. ,vol. 83, pp. 252- 260 ,(1996) , 10.1002/J.1537-2197.1996.TB12702.X
S. Dumolin‐Lapegue, M.‐H. Pemonge, R. J. Petit, An enlarged set of consensus primers for the study of organelle DNA in plants Molecular Ecology. ,vol. 6, pp. 393- 397 ,(1997) , 10.1046/J.1365-294X.1997.00193.X
Jeffrey S. Chamberlain, Richard A. Gibbs, Joel E. Rainer, Phi Nga Nguyen, C. Thomas, Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification Nucleic Acids Research. ,vol. 16, pp. 11141- 11156 ,(1988) , 10.1093/NAR/16.23.11141
O. Henegariu, N.A. Heerema, S.R. Dlouhy, G.H. Vance, P.H. Vogt, Multiplex PCR: critical parameters and step-by-step protocol. BioTechniques. ,vol. 23, pp. 504- 511 ,(1997) , 10.2144/97233RR01
C. Kik, A. M. Samoylov, W. H. J. Verbeek, L. W. D. van Raamsdonk, Mitochondrial DNA variation and crossability of leek (Allium porrum) and its wild relatives from the Allium ampeloprasum complex Theoretical and Applied Genetics. ,vol. 94, pp. 465- 471 ,(1997) , 10.1007/S001220050438
Barry C Holwerda, Sakti Jana, William L Crosby, CHLOROPLAST AND MITOCHONDRIAL DNA VARIATION IN HORDEUM VULGARE AND HORDEUM SPONTANEUM Genetics. ,vol. 114, pp. 1271- 1291 ,(1986) , 10.1093/GENETICS/114.4.1271