Structure-Based Design of Potent and Selective Ligands at the Four Adenosine Receptors

作者: Willem Jespers , Ana Oliveira , Rubén Prieto-Díaz , María Majellaro , Johan Åqvist

DOI: 10.3390/MOLECULES22111945

关键词: Structure basedBiopharmaceuticalG protein-coupled receptorReceptorFree energy perturbationAdenosine receptorLigandChemistryAdenosineStereochemistry

摘要: The four receptors that signal for adenosine, A1, A2A, A2B and A3 ARs, belong to the superfamily of G protein-coupled (GPCRs). They mediate a number (patho)physiological functions have attracted interest biopharmaceutical sector decades as potential drug targets. many crystal structures lately A1 allow use advanced computational, structure-based ligand design methodologies. Over last decade, we assessed efficient synthesis novel ligands specifically addressed each ARs. We herein review update results this program with particular focus on molecular dynamics (MD) free energy perturbation (FEP) protocols. first in silico mutagenesis A1AR here reported allows understanding specificity high affinity xanthine-antagonist 8-Cyclopentyl-1,3-dipropylxanthine (DPCPX). On A2AAR, demonstrate how FEP simulations can distinguish conformational selectivity recent series partial agonists. These are complemented revision enantiospecific antagonists A2BAR, tool bioisosteric A3AR.

参考文章(63)
A. Townsend-Nicholson, P.R. Schofield, A threonine residue in the seventh transmembrane domain of the human A1 adenosine receptor mediates specific agonist binding. Journal of Biological Chemistry. ,vol. 269, pp. 2373- 2376 ,(1994) , 10.1016/S0021-9258(17)41954-5
András Fiser, Andrej Šali, Modeller: generation and refinement of homology-based protein structure models. Methods in Enzymology. ,vol. 374, pp. 461- 491 ,(2003) , 10.1016/S0076-6879(03)74020-8
Robert W. Zwanzig, High‐Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases The Journal of Chemical Physics. ,vol. 22, pp. 1420- 1426 ,(1954) , 10.1063/1.1740409
Henrik Keränen, Hugo Gutiérrez-de-Terán, Johan Åqvist, Structural and Energetic Effects of A2A Adenosine Receptor Mutations on Agonist and Antagonist Binding PLoS ONE. ,vol. 9, pp. e108492- ,(2014) , 10.1371/JOURNAL.PONE.0108492
Hugo Gutiérrez-de-Terán, Henrik Keränen, Jhonny Azuaje, David Rodríguez, Johan Åqvist, Eddy Sotelo, Computer-Aided Design of GPCR Ligands Methods in Molecular Biology. ,vol. 1272, pp. 271- 291 ,(2015) , 10.1007/978-1-4939-2336-6_19
Jhonny Azuaje, Carlos Carbajales, Manuel González-Gómez, Alberto Coelho, Olga Caamaño, Hugo Gutiérrez-de-Terán, Eddy Sotelo, Pyrazin-2(1H)-ones as a novel class of selective A3 adenosine receptor antagonists. Future Medicinal Chemistry. ,vol. 7, pp. 1373- 1380 ,(2015) , 10.4155/FMC.15.69
Berk Hess, Carsten Kutzner, David van der Spoel, Erik Lindahl, GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation Journal of Chemical Theory and Computation. ,vol. 4, pp. 435- 447 ,(2008) , 10.1021/CT700301Q
Robert Abel, Tom Young, Ramy Farid, Bruce J Berne, Richard A Friesner, None, Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding Journal of the American Chemical Society. ,vol. 130, pp. 2817- 2831 ,(2008) , 10.1021/JA0771033
Gregory King, Arieh Warshel, A surface constrained all‐atom solvent model for effective simulations of polar solutions Journal of Chemical Physics. ,vol. 91, pp. 3647- 3661 ,(1989) , 10.1063/1.456845