The chromatin backdrop of DNA replication: Lessons from genetics and genome-scale analyses
作者： Amy L. Conner , Mirit I. Aladjem
DOI: 10.1016/J.BBAGRM.2012.01.017
关键词: ChIA-PET 、 Control of chromosome duplication 、 Eukaryotic DNA replication 、 Origin recognition complex 、 Pre-replication complex 、 Chromatin remodeling 、 Genetics 、 Minichromosome maintenance 、 DNA replication factor CDT1 、 Biology
摘要: The entire cellular genome must replicate during each cell cycle, but it is yet unclear how replication proceeds along with chromatin condensation and remodeling while ensuring the fidelity of replicated genome. Mapping initiation sites can provide clues for coordination DNA transcription on a whole-genome scale. Here we discuss recent insights obtained from genome-scale analyses in mammalian cells ask modifications affect frequency events. We also sequences, such as insulators replicators, which modulate target genes, use genome-wide maps to evaluate possible commonalities between replicators insulators. This article part Special Issue entitled: Chromatin time space.
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sci-hub.se 参考文章(107)
Lixin Wang, Chii Mei Lin, Joseph O. Lopreiato, Mirit I. Aladjem, Cooperative sequence modules determine replication initiation sites at the human β-globin locus Human Molecular Genetics. ,vol. 15, pp. 2613- 2622 ,(2006) , 10.1093/HMG/DDL187
David M. Gilbert, Evaluating genome-scale approaches to eukaryotic DNA replication Nature Reviews Genetics. ,vol. 11, pp. 673- 684 ,(2010) , 10.1038/NRG2830
M. Gomez, N. Brockdorff, Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 6923- 6928 ,(2004) , 10.1073/PNAS.0401854101
J.Russell Lipford, Stephen P Bell, Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Molecular Cell. ,vol. 7, pp. 21- 30 ,(2001) , 10.1016/S1097-2765(01)00151-4
Conrad A Nieduszynski, Yvonne Knox, Anne D Donaldson, Genome-wide identification of replication origins in yeast by comparative genomics Genes & Development. ,vol. 20, pp. 1874- 1879 ,(2006) , 10.1101/GAD.385306
Tsuyoshi Mishiro, Ko Ishihara, Shinjiro Hino, Shuichi Tsutsumi, Hiroyuki Aburatani, Katsuhiko Shirahige, Yoshikazu Kinoshita, Mitsuyoshi Nakao, Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster The EMBO Journal. ,vol. 28, pp. 1234- 1245 ,(2009) , 10.1038/EMBOJ.2009.81
Melvin L DePamphilis, The 'ORC cycle': a novel pathway for regulating eukaryotic DNA replication. Gene. ,vol. 310, pp. 1- 15 ,(2003) , 10.1016/S0378-1119(03)00546-8
R.F Kalejta, X Li, L.D Mesner, P.A Dijkwel, H.-B Lin, J.L Hamlin, Distal Sequences, but Not ori-β/OBR-1, Are Essential for Initiation of DNA Replication in the Chinese Hamster DHFR Origin Molecular Cell. ,vol. 2, pp. 797- 806 ,(1998) , 10.1016/S1097-2765(00)80294-4
Dvir Aran, Gidon Toperoff, Michael Rosenberg, Asaf Hellman, Replication timing-related and gene body-specific methylation of active human genes Human Molecular Genetics. ,vol. 20, pp. 670- 680 ,(2011) , 10.1093/HMG/DDQ513
Hisao Masai, Seiji Matsumoto, Zhiying You, Naoko Yoshizawa-Sugata, Masako Oda, Eukaryotic chromosome DNA replication: where, when, and how? Annual Review of Biochemistry. ,vol. 79, pp. 89- 130 ,(2010) , 10.1146/ANNUREV.BIOCHEM.052308.103205